KEGG   Dyella japonica: HY57_16040
Entry
HY57_16040        CDS       T03215                                 
Name
(GenBank) protein hfq
  KO
K03666  host factor-I protein
Organism
dja  Dyella japonica
Pathway
dja02024  Quorum sensing
dja03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:dja00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    HY57_16040
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    HY57_16040
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:dja03019]
    HY57_16040
   03036 Chromosome and associated proteins [BR:dja03036]
    HY57_16040
Messenger RNA biogenesis [BR:dja03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     HY57_16040
Chromosome and associated proteins [BR:dja03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    HY57_16040
SSDB
Motif
Pfam: Hfq LSM
Other DBs
NCBI-ProteinID: AIF48640
UniProt: A0A075K3N3
Position
complement(3748049..3748312)
AA seq 87 aa
MSKGQSLQDPFLNALRRERVPVAIYLVNGIKLQGTIESFDQFVVLLRNQVSQMVYKHAIS
TVVPSRNVRVGNGHEGHEGSGTAEPEA
NT seq 264 nt   +upstreamnt  +downstreamnt
atgtccaaagggcaatcgttgcaagatccatttctcaatgcactgcgccgcgagcgcgtt
ccggtcgccatctacctggtcaatggcatcaagctgcaaggcacgatcgaatcgttcgat
cagttcgtcgtcctgctgcgcaaccaggtgagccagatggtctacaagcacgccatctcc
accgtggttcccagccgcaacgtccgcgtcggcaatggccacgaggggcacgaaggttcg
ggtacggccgagccggaagcttga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (2)   
   Pfam (2)   
All databases (12)   

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