KEGG   Desulfofundulus kuznetsovii: Desku_3458
Entry
Desku_3458        CDS       T01499                                 
Name
(GenBank) transcription termination factor Rho
  KO
K03628  transcription termination factor Rho
Organism
dku  Desulfofundulus kuznetsovii
Pathway
dku03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:dku00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Desku_3458
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:dku03021]
    Desku_3458
   03019 Messenger RNA biogenesis [BR:dku03019]
    Desku_3458
Transcription machinery [BR:dku03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     Desku_3458
Messenger RNA biogenesis [BR:dku03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     Desku_3458
SSDB
Motif
Pfam: Rho_RNA_bind ATP-synt_ab Rho_N AAA_22 OB_RNB NACHT ATPase_2 AAA_25 Spore_III_AA AAA DUF1516
Other DBs
NCBI-ProteinID: AEG16938
Position
complement(3484560..3485876)
AA seq 438 aa
MNYSELEGKTMQELYKIARELELTGYSRLRKRELIFEIIKAQTEKNGLIYAQGVLEILPD
GYGFLRPFQYLPSHDDIYVSSSQIRRFDLRTGDLVAGQVRGPKENERYYALLRVEQVNGV
DPEKAVERLHFDGLTPLYPQERIRLETQPDRVATRIIDLVAPIGKGQRGLIVAPPKAGKT
MLLKEIANSITQNHPEIYLIVLLIDERPEEVTDIERSVDGEVVSSTFDEPPENHVKVAEM
VLERAKRLVEHKQDVVILLDSITRLARAHNLVIPPSGRTLSGGVDPAALHKPKRFFGAAR
NLEEGGSLTILATALIETGSRMDDVIFEEFKGTGNMELILDRRLAERRLFPAIDVQRSGT
RKEELLLSRDELEWIWFFRKATVGMAPWEAMEMLVERMKKNKTNEELLRLFRTARKSGPV
VPPDRPPDVRRDITPEGQ
NT seq 1317 nt   +upstreamnt  +downstreamnt
gtgaattattcggaactagaaggcaaaaccatgcaggaactgtacaaaatagcccgggaa
ctggagcttaccgggtattcccgcctgcgcaagcgggaactgatttttgaaatcattaaa
gcccagacggaaaaaaacgggctcatctacgcccagggggtgctggagatactccccgac
ggctacgggttcctgcggcccttccagtacctgcccagccacgatgatatctacgtgtct
tcctcccagatccgccggttcgacctgcgcaccggcgacctcgtagccggacaggtgcgc
gggcccaaggaaaacgagcgctactatgcccttttgcgtgtggaacaggttaacggcgtc
gatccggagaaagccgtcgagagattgcatttcgacggcctcacccctctctacccccag
gagcggatccgcctggagacccagcctgacagggttgccaccaggattatcgacctggtt
gcccccatcggcaaaggacagcggggtttgattgtggcgccgcccaaagcaggcaaaacc
atgcttttaaaagaaattgccaacagcattacccagaatcatcctgaaatttacctcatc
gtgctccttattgacgaacggccggaggaagtcaccgatatcgaacgttcggttgacggg
gaagtggtgagttccacctttgacgagccgccggaaaaccatgtaaaagtggcggaaatg
gtgctggaacgggccaagcgcctggtggaacacaagcaggatgtggtgatcctgctggac
agcatcacccggttggcccgggcgcataacctggtgatcccccccagcgggcgtaccctg
tccgggggcgtggatccggcggcgctccataagcccaagcggttcttcggtgccgcccgc
aacctggaggaagggggtagcctgaccattctggccaccgccctcattgaaacgggcagc
cggatggacgacgtgatctttgaagagttcaaaggtacggggaatatggagctgattttg
gaccgccgcctggcggaacggcgcctgttcccggccattgatgtgcagcgttccggcacg
cgcaaggaagaattgctgctgtcccgggatgaactggagtggatctggtttttccgcaag
gcaaccgtgggcatggccccctgggaggccatggagatgctcgtggagcgcatgaaaaaa
aacaaaaccaacgaagaactcctgcgcctcttccgtactgcccgcaagagcggcccggtg
gttccccccgacagaccccccgatgtgcgccgggacattacccccgaaggccagtga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (11)   
   Pfam (11)   
All databases (19)   

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