KEGG   Drosophila melanogaster (fruit fly): Dmel_CG2097Help
Entry
Dmel_CG2097       CDS       T00030                                 

Gene name
Sym
Definition
(RefSeq) symplekin
  KO
K06100  symplekin
Organism
dme  Drosophila melanogaster (fruit fly)
Pathway
dme03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:dme00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    Dmel_CG2097 (Sym)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:dme03021]
    Dmel_CG2097 (Sym)
   03019 Messenger RNA biogenesis [BR:dme03019]
    Dmel_CG2097 (Sym)
Transcription machinery [BR:dme03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Transcription termination factor
     Dmel_CG2097 (Sym)
Messenger RNA biogenesis [BR:dme03019]
 Eukaryotic Type
  mRNA processing factors
   3' end processing
    Cleavage stimulation factor (CSTF) complex
     Dmel_CG2097 (Sym)
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif
Pfam: Symplekin_C DUF3453 HEAT HEAT_2
Motif
Other DBs
NCBI-GeneID: 40709
NCBI-ProteinID: NP_649580
FlyBase: FBgn0037371
UniProt: Q8MSU4
Structure
PDB: 

Position
3R
AA seq 1165 aa AA seqDB search
MDSIIGRSQFVSETANLFTDEKTATARAKVVDWCNELVIASPSTKCELLAKVQETVLGSC
AELAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKVKVELLPHVINVVSMLLRDNSAQVI
KRVIQACGSIYKNGLQYLCSLMEPGDSAEQAWNILSLIKAQILDMIDNENDGIRTNAIKF
LEGVVVLQSFADEDSLKRDGDFSLADVPDHCTLFRREKLQEEGNNILDILLQFHGTTHIS
SVNLIACTSSLCTIAKMRPIFMGAVVEAFKQLNANLPPTLTDSQVSSVRKSLKMQLQTLL
KNRGAFEFASTIRGMLVDLGSSTNEIQKLIPKMDKQEMARRQKRILENAAQSLAKRARLA
CEQQDQQQREMELDTEELERQKQKSTRVNEKFLAEHFRNPETVVTLVLEFLPSLPTEVPQ
KFLQEYTPIREMSIQQQVTNISRFFGEQLSEKRLGPGAATFSREPPMRVKKVQAIESTLT
AMEVDEDAVQKLSEEEFQRKEEATKKLRETMERAKGEQTVIEKMKERAKTLKLQEITKPL
PRNLKEKFLTDAVRRILNSERQCIKGGVSSKRRKLVTVIAATFPDNVRYGIMEFILEDIK
QRIDLAFSWLFEEYSLLQGFTRHTYVKTENRPDHAYNELLNKLIFGIGERCDHKDKIILI
RRVYLEAPILPEVSIGHLVQLSLDDEFSQHGLELIKDLAVLRPPRKNRFVRVLLNFSVHE
RLDLRDLAQAHLVSLYHVHKILPARIDEFALEWLKFIEQESPPAAVFSQDFGRPTEEPDW
REDTTKVCFGLAFTLLPYKPEVYLQQICQVFVSTSAELKRTILRSLDIPIKKMGVESPTL
LQLIEDCPKGMETLVIRIIYILTERVPSPHEELVRRVRDLYQNKVKDVRVMIPVLSGLTR
SELISVLPKLIKLNPAVVKEVFNRLLGIGAEFAHQTMAMTPTDILVALHTIDTSVCDIKA
IVKATSLCLAERDLYTQEVLMAVLQQLVEVTPLPTLMMRTTIQSLTLYPRLANFVMNLLQ
RLIIKQVWRQKVIWEGFLKTVQRLKPQSMPILLHLPPAQLVDALQQCPDLRPALSEYAES
MQDEPMNGSGITQQVLDIISGKSVDVFVTDESGGYISAEHIKKEAPDPSEISVISTVPVL
TSLVPLPVPPPIGSDLNQPLPPGED
NT seq 3498 nt NT seq  +upstreamnt  +downstreamnt
atggatagcataattggacgcagccagtttgtctcggagacggccaatctgttcacagac
gagaagacagctacggcaagagctaaggtggtcgattggtgcaatgagctggtcatcgca
tcgccttcgacaaagtgcgaactgctggctaaggtgcaggagactgtgcttggatcgtgc
gcggagctggccgaagaattcctggagtccgtgctgtctttggcccacgactcaaacatg
gaggttcgcaagcaggtagtcgccttcgtagagcaagtttgtaaagtgaaggtggagtta
ctgccccatgtcattaacgtcgtgtctatgctgcttagggataactcggctcaggtaatc
aaaagagtgatccaagcctgcggtagcatctacaagaatggattgcagtacttgtgcagc
ctcatggagcccggcgacagtgcggagcaggcgtggaacatcctcagcttaatcaaggcg
caaatactggacatgatcgacaatgaaaacgacggcatacgtacaaatgccattaagttc
ttggagggcgtcgtggttctgcagagctttgctgacgaggacagtctgaaacgagatgga
gacttctcgctggcagatgtccccgatcactgcacactattccgccgtgaaaagttgcaa
gaggagggcaacaatattttagatatcttgcttcagttccacggaacaacgcatatttcc
tcagtgaacttgattgcctgcacaagcagcttgtgtacaattgccaaaatgcgacccatt
ttcatgggcgccgtggtggaagcctttaagcagctgaatgccaacctgccgcccaccctc
actgactcgcaagtaagctccgtgcgtaagagccttaagatgcagttgcagacattgctg
aagaaccgcggtgcctttgagtttgcaagcactatccgaggaatgttagttgatctgggg
tcctccacaaatgagatccagaagcttattcccaaaatggacaaacaggaaatggctcgt
agacaaaaacgcatcctcgaaaatgctgcgcaaagtcttgcaaagcgtgcgcgcttggcc
tgtgagcagcaggatcagcagcagcgagaaatggagctagacactgaggaattggaacga
cagaaacagaagtctactcgagttaacgaaaagtttctggcagagcatttccgtaatcct
gaaactgttgtgaccctggtgctggagttcctgcccagtctgcccactgaggtgccacaa
aagttccttcaggaatatacacccattcgcgaaatgtctattcagcagcaggtaaccaat
atctccagattttttggcgaacaactatctgaaaagcgcctaggcccaggtgccgcaacc
ttcagtcgagagccgccaatgcgggttaagaaagtgcaagcgattgaatcaacactaact
gcaatggaagtggacgaggatgctgttcaaaaactgagtgaggaagagtttcagcgtaag
gaggaagcaaccaagaagctgcgcgagaccatggagcgcgccaagggtgagcagactgtt
attgaaaagatgaaggagcgcgccaagacgctgaagctgcaggagatcaccaagcctctg
ccacgcaacttaaaagagaagttcctaactgatgcagtgcgtcgcatcctcaactcggag
cggcaatgcattaagggaggagtgtcatcaaagcgccgtaagctggtcaccgtgattgct
gccacctttcccgataacgtacgttacggcatcatggagttcatcctggaggatataaaa
cagcgtatcgatttggcattttcctggctctttgaggagtactctctgctgcaaggattt
acaaggcacacttatgttaagacagagaacagacccgatcacgcctacaacgagttgctg
aataagcttatcttcggcattggagagcgttgcgatcacaaggataagattattttgatt
cgtcgagtatatctagaagcacccattcttccggaagtctcaattggacatctagttcaa
ttaagcctggacgacgagttctcccagcacggcctggagctaatcaaggaccttgcagtg
cttaggccgccgcgaaagaatcgtttcgttagagtgttgctcaacttttctgtgcatgag
cgactggatctgcgggatctggcacaggcccacctggtcagtctgtaccatgtacacaaa
atactaccggctcgaatagacgaattcgctctggagtggcttaaatttatcgaacaggaa
tctccgccggcagctgttttctcgcaggactttggtcgaccaaccgaggagcctgattgg
cgggaagacactaccaaggtgtgctttggtttggcctttaccctgctgccctataaaccg
gaagtttacttacagcaaatttgtcaagtgtttgtttctacatctgccgaactgaaacgc
acgatcttgcgcagtctagatattcccataaaaaagatgggtgtagaaagcccgacgttg
ctgcaactaatcgaggattgtcctaagggtatggagaccttagtgatccgtataatttac
atactgacagagcgagtgccatccccccatgaagaattggttcggcgggttcgggatctc
taccagaacaaggtcaaggatgtgcgcgtgatgatacccgtgctaagtggcttaacccga
tccgagctaatttccgttctgccgaagctgattaaacttaatcccgctgtggtcaaggag
gttttcaatcgattgcttggtatcggtgccgaattcgcgcatcagacgatggccatgacc
cccactgatattctcgtggctttgcacaccatcgatacgagtgtctgcgatattaaagcc
atcgttaaggctacatccctatgtttggctgaaagagatctgtacacacaggaggtactt
atggctgtgctgcaacagcttgtagaggttactccgctgcctactctgatgatgcgcaca
acaattcagagtctaactctgtacccgcgtctggcaaactttgtaatgaacttgttgcag
cgtctgataatcaagcaggtctggcggcaaaaagtaatctgggagggctttttaaagacc
gtgcagcgcctgaaaccgcagtcaatgccgatcctgctgcaccttcctcccgcccagctg
gtggacgcactgcagcagtgccccgatttaaggccagcattgtcggaatacgcggagagc
atgcaggatgaaccaatgaatggtagtggtataacccagcaggttctggacatcatctcc
gggaaatcagttgatgtgttcgtgacggacgaaagcggcggttacatcagtgccgagcat
attaaaaaagaggcaccggatccatcagaaattagtgtcatttccacagtgcccgtactg
acgtctctagtaccactaccagttcctccccccataggcagtgatcttaaccagcccctg
ccgcctggcgaggactag

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