KEGG T02207: Desmer

Desulfosporosinus meridiei: Desmer_1733

Entry

Desmer_1733       CDS       T02207

Name

(GenBank) type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit

K02470

DNA gyrase subunit B [EC:5.6.2.2]

Organism

dmi Desulfosporosinus meridiei

Brite

KEGG Orthology (KO) [BR:dmi00001]
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:dmi03032]
    Desmer_1733
   03400 DNA repair and recombination proteins [BR:dmi03400]
    Desmer_1733
Enzymes [BR:dmi01000]
5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.2  DNA topoisomerase (ATP-hydrolysing)
     Desmer_1733
DNA replication proteins [BR:dmi03032]
Prokaryotic type
  DNA Topoisomerases
   Desmer_1733
DNA repair and recombination proteins [BR:dmi03400]
Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHIIR (short-homology-independent illegitimate recombination)
     Facilitator
      Desmer_1733

SSDB

Motif

Pfam:

DNA_gyraseB DNA_gyraseB_C HATPase_c Toprim HATPase_c_3

Other DBs

NCBI-ProteinID:

AFQ43705

UniProt:

J7IPY9

Position

1826796..1828709

AA seq 637 aa
MSAKQYNADSIQVLEGLEAVRKRPGMYIGSTGSRGLHHLAYEIIDNAIDEAGAGFCDQIS
VIINKDGSITIEDNGRGIPVDIHPSKKVPAVRLAFETLHAGGKFSGETYKTSGGLHGVGA
SVVNALCVYLTVDIKRNGKLYRVEYTDGGQLKSDLAIVKKSIKGTGTIVTFKPDPLIFKE
TTVFKYDTLRSRLMELSFLNSDLTIILTDTRGELKSETFSSKNGIIGFVEHLINESGFSP
VHKKAIYFTGEKDEVVLECAIQYNHSDEESLHSYVNNIPTDEGGTHESGFRTALTKAFNI
YGRKNNIFKKEENLIGDDLKDGLTCVLSLKIKDPQFEGQTKTKLSNMEVEGVVQSITNEG
ITQFFEKNPSIAKDVINRALTTCLIRLAAKKAKELKKKARDAEIKALSGKLAACSGKDKS
RNELFLVEGDSAGGSAKMGRDRRFQAILPLRGKVINTYRAKIDKVLENEEIRSIISAVGS
GIGKEFDIEKGNYARVCIMTDADIDGAHIRCLLLTFFYRYMKPLILSGRVYIAQSPLYKI
EKERGKIIRYAFDDEELRKELKELGKTAKISRYKGLGEMNPEQLWETTLNPVNRRMIQVT
IDDTLEAERKLRILMSEQVEPRREFMMENIIFTDNDM

NT seq 1914 nt +upstreamnt +downstreamnt
ttgtcagcgaagcaatataacgcagattctattcaggtcttagaaggactggaagcagta
cgtaaacgtcctggcatgtatatcggctctaccggaagcagaggactacatcatttagcc
tatgaaattattgataatgctattgatgaggcaggagctggattttgtgatcaaatctca
gtgattattaataaagatggttcgataactattgaggacaatggacgcggaattccggtt
gatatacacccttccaaaaaagttcccgctgtgcgcttggcctttgagaccttgcacgcc
ggaggaaaatttagtggagagacttataaaacttcgggcggactgcatggtgtcggagca
agtgtagtcaatgccttgtgcgtttatttgaccgttgatattaaacggaacggcaaatta
tatcgtgttgaatacacagatggagggcagcttaagtccgatctagctattgtcaagaaa
agcattaaaggcacaggtacaatagttacctttaaacccgatccgctaatatttaaagaa
accacggtttttaaatatgacactttgagaagtcgacttatggaactttcttttctgaat
agtgatttgacaattattttgacagatactcgaggggaattaaaatctgaaacattttct
tcaaaaaacggaattattggttttgtagagcatttaattaatgaatcaggtttttcccca
gtacataagaaagcgatttattttacaggggaaaaagatgaagtagttctggaatgtgcc
atccagtacaatcatagtgatgaagaatccctgcattcttatgtcaataatatccctaca
gacgaggggggaactcatgagtcggggttccgaacagctttaactaaagccttcaacatc
tatgggagaaaaaataatattttcaagaaagaggaaaacctcatcggggatgaccttaag
gatgggttaacctgtgtactctctctaaaaatcaaggatcctcaatttgaaggtcaaaca
aaaacgaagctttcaaacatggaagttgaaggtgtcgttcaatcaataaccaatgagggg
attacccaattttttgaaaaaaacccctcaatagcgaaggacgtcattaatagagcattg
acaacctgcctgattagacttgctgcgaagaaggccaaagaattaaaaaagaaagctcga
gatgctgagataaaggctttgagcggtaaacttgcagcttgtagcggaaaagataaatcc
cgcaatgagctttttcttgtagagggtgatagtgccggcggttcggcgaaaatggggcgt
gatcgacgttttcaagcaattcttcctttgagagggaaagttattaatacctaccgcgct
aagattgataaggtcttagaaaatgaagaaattagaagtatcatttctgccgttggttcg
ggaattggcaaggaatttgacatagaaaaaggtaattatgcaagggtttgtattatgact
gatgctgatattgacggagcacatattagatgtctcttattaacttttttctataggtac
atgaaaccgctgattctgagtggaagagtttatattgctcaatctcctttatataaaatt
gagaaggagaggggtaaaatcatacgctatgcttttgacgatgaagagttaagaaaagag
ctcaaagaactaggaaaaacggcaaaaatatctcgctacaaaggccttggagagatgaat
ccggaacaactttgggaaactaccctgaatccggttaataggcgtatgattcaggtaaca
atagatgatactcttgaagctgagcgaaagctgagaatcttaatgagtgagcaagttgag
ccaagacgtgagtttatgatggagaatatcatctttactgacaacgatatgtag

All links

Ontology (4)   
   KEGG BRITE (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (5)   
   Pfam (5)   
All databases (15)   

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