KEGG   Desulfosporosinus meridiei: Desmer_3320
Entry
Desmer_3320       CDS       T02207                                 
Name
(GenBank) DNA/RNA helicase, superfamily II
  KO
K05592  ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
Organism
dmi  Desulfosporosinus meridiei
Pathway
dmi03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:dmi00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Desmer_3320
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:dmi03019]
    Desmer_3320
   03009 Ribosome biogenesis [BR:dmi03009]
    Desmer_3320
Enzymes [BR:dmi01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     Desmer_3320
Messenger RNA biogenesis [BR:dmi03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     Desmer_3320
Ribosome biogenesis [BR:dmi03009]
 Prokaryotic type
  rRNA helicases
   Desmer_3320
SSDB
Motif
Pfam: DEAD Helicase_C DbpA ResIII CMS1 AAA_19 AAA_22 UvrD-helicase Terminase_6N
Other DBs
NCBI-ProteinID: AFQ45193
UniProt: J7J1J4
Position
complement(3468190..3469635)
AA seq 481 aa
MNKGNFNDFQLSSELLKAISLLNFISPSKVQEQVIPAVLAQKDIIVKSQTGSGKTAAFAI
PICELVDWEQNKPQALVLTPTRELAVQVKEDLFHIGRFRRIKVAAIFGKYPFHVQEKELK
QKTHVVVGTPGRLIDHIERGTLDISNIKYLVIDEADEMLNMGFIEQIERIIANLSHERVT
VLLSATMPQDINVLCSKIMRNPIRVEIEEQNPAADRIAQERYLVDQTDKMKLLQDLTMVE
NPDSCMIFCNTKQTVDEVYTELLKLDYSCDKLHGGMEQRDRLNVMKDFKQGYFRYLCATD
VASRGLDIEDITLVINYDIPYDRESYVHRIGRTGRVNKLGKAITFVTKNEDKFLKEIHDY
IGKEILLKERPDEATVHESKQDFMAKNNTLPEIKETKGVQLSTEIMKIHVNAGKKTKMRP
VDIVGTLCSIEGITPADIGIINILDVSTFVEILNNKGELVLQNLQNTPIKGRLRKVSKAD
R
NT seq 1446 nt   +upstreamnt  +downstreamnt
atgaacaagggtaattttaacgactttcaattaagtagtgaattattaaaagcaattagc
ttactaaatttcatcagtcccagtaaagttcaggagcaagtgatcccggcagtcttggcc
caaaaggatatcatcgtcaagtcccagaccggaagcggaaagacggcggcctttgctatc
cctatttgtgaattagtggattgggaacagaataaaccccaggcattagtgcttaccccc
accagagaactcgcagttcaggtcaaagaagatctgtttcatatcggcagatttagaaga
ataaaagtagcagcaatttttgggaagtacccttttcatgttcaagaaaaggaacttaaa
caaaaaacccatgttgtggttggaaccccgggtcgcttgatcgatcatattgaaagagga
accttggatatatcaaatataaaatacctagtcattgatgaagccgatgaaatgttgaat
atgggctttatcgagcaaatcgaaaggatcattgccaacttgtctcatgaacgggtgacc
gttttattgtcagcgacaatgccccaagacatcaatgttttatgcagtaagattatgcga
aatcccattcgcgtggaaatcgaagaacagaatcctgcggccgaccggatcgctcaggaa
agatatcttgttgatcagacagataagatgaagcttcttcaagatctaacgatggttgaa
aacccggacagttgtatgatcttttgcaatactaagcaaactgtcgatgaagtttacaca
gaactcctgaagctggactattcttgtgataaacttcatggcggaatggaacaacgagat
cgattgaatgtcatgaaggattttaaacaaggatatttcagatatctatgtgcgacagat
gttgcctcaagaggtctggatatcgaggacattaccttggtcatcaattatgacatcccc
tacgaccgagaaagctatgttcatcggatcggaagaacaggacgagtcaacaaactgggt
aaagccataacctttgttaccaaaaatgaagacaagtttttaaaggaaatccacgactac
atcggcaaagagattcttctaaaggaaagaccggatgaagcaacggtacatgagtcaaaa
caggattttatggcgaaaaacaatactttgccagaaatcaaggaaacaaaaggcgtgcag
ttgagtaccgaaatcatgaagatccatgtgaatgccgggaagaaaacaaagatgagaccc
gtcgacattgtgggcacgctttgcagtattgagggcataaccccggcagatatcggaatc
atcaatatcctggatgtatcaacctttgttgaaatcttaaacaataagggtgagttggtg
ctgcagaatctgcagaacactccgattaagggccggcttcggaaggtaagcaaagcagac
cggtaa

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (9)   
   Pfam (9)   
All databases (19)   

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