KEGG   Drosophila miranda: 108161369
Entry
108161369         CDS       T06132                                 
Name
(RefSeq) regulator of nonsense transcripts 1 homolog
  KO
K14326  regulator of nonsense transcripts 1 [EC:3.6.4.13 5.6.2.3]
Organism
dmn  Drosophila miranda
Pathway
dmn03013  Nucleocytoplasmic transport
dmn03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:dmn00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    108161369
   03015 mRNA surveillance pathway
    108161369
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:dmn03019]
    108161369
Enzymes [BR:dmn01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.3  DNA 5'-3' helicase
     108161369
Messenger RNA biogenesis [BR:dmn03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Surveillance factors
    Surveillance complex
     108161369
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     108161369
SSDB
Motif
Pfam: UPF1_Zn_bind AAA_12 AAA_11 UPF1_1B_dom AAA_30 AAA_19 ResIII SLFN-g3_helicase DEAD Helicase_RecD AAA_16 AAA_22 UvrD-helicase ATPase nSTAND3 SRP54 AAA_5 AAA_32 AAA_10 CPSase_L_D2
Other DBs
NCBI-GeneID: 108161369
NCBI-ProteinID: XP_017151106
Position
XL:complement(19389524..19395605)
AA seq 1209 aa
MSVDTYAASSALSFLDMDDNELLPGADTQPTQYDYRDFTMPSNSQSQTQGELLEITRRRS
VGEMHPRLASITNDLGDLQFEEEDDEHGGSFVKELPPHACKYCGIHDPSTVVMCNNCKKW
FCNGRGSTSGSHIINHLVRAKHREVTLHADGPLGETVLECYSCGVRNVFVLGFIPAKADS
VVVLLCRQPCAAQNSLKDMNWDQDQWKPLIADRCFLPWLVKQPSEQGQLRARQISAAQIN
KLEELWKDNIDATFQDLEKPGIDSEPSQVLLRYEDGYQYEKTFGPLVRLEADYDKKLKES
ATQENIEVRWDVGLNKKTIAYFTLAKTDSDMKLMHGDELRLRYVGEMYSPWNEIGHVIKV
PDNFGDDIGLELKSSTNAPVKCSSNFSVDFIWKCTSFDRMTRALRTFAMDRQSVSNFIYS
RLLGHGRPDANDDVLFRGAQPKLFSAPNLPDLNRSQVYAVKHALQRPLSLIQGPPGTGKT
VTSATIVYQLVKQHGGTVLVCAPSNTAVDQLTEKIHRTNLKVVRVCAKSREAIDSPVSFL
ALHNQIRSMETNTELKKLQQLKDETGELSSADEKRYRNLKRGTENQLLEAADVICCTCVG
AGDGRLSRIKFTSILIDESMQSTEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAARAG
LSQSLFERLVVLGIRPFRLEVQYRMHPELSQFPSNFFYEGSLQNGVCAEDRRLKLDFPWP
QPERPMFFLVTQGQEEIAGSGTSFLNRTEAANVEKITTRFLKAGIKPEQIGIITPYEGQR
AYLVQYMQYQGSLHSRLYQEIEIASVDAFQGREKDIIIMSCVRSNERQGIGFLNDPRRLN
VALTRAKYGIIIVGNPKVLAKQQLWNHLLNFYKDRKVLVEGSLNNLKESLIHFQKPKKLV
NTMNMGAHFMSTMVADAKEVMVPGSVYDRSGSYNQSRPIASASNQVHQHQNGGNFGSPYH
SSPLGYGAPSSIGNAGAMAPAQGGGGAGGNGNGGGGNGNNNYGNASNSISAGGGGAGTGN
NWTTAQQPLMQHDSISYISNEHGAAALNNMPVPVGMFMNMSNLPPRFYNQHQQAISAAKQ
NRGLPPPPSSTGGNFAMTGGPGNGLNPGPNVGNGSASSSNHLGGGGSKKKFPKNRGADLA
QSVSTGTPFSQQPAPMSLQMTQPGGYTLSQQPEMSQDYGQISQMDGLLSQDVSFSVSGER
SLNQFSQPY
NT seq 3630 nt   +upstreamnt  +downstreamnt
atgagcgtggacacgtatgcggccagctcggcgctgtcgttcctggacatggacgacaac
gagttgctgcctggtgccgacacgcagccgacccagtacgactaccgtgacttcaccatg
ccctcgaactcacagagccagacccagggcgagctgttggagataactcgccgtcgctcg
gttggagagatgcatccacgtttggccagcatcacgaacgatctcggggacttgcagttc
gaggaggaggacgacgagcatggcggttcgtttgtgaaggagctgccgccgcatgcctgc
aagtactgtggcatccatgatccgtccactgtggtcatgtgcaacaactgcaagaagtgg
ttctgcaacggccgtggcagcacctccggctcccacatcatcaatcatctggtgcgcgcc
aagcatcgtgaggtgacgctccatgccgacgggcccctgggcgagaccgtgctcgagtgc
tactcgtgcggcgtccgcaatgtgtttgtcctgggcttcattccggccaaggccgactct
gtggtggttctgctctgccgccagccatgtgcggcccagaactcgctgaaggacatgaac
tgggatcaggaccagtggaagccgctgatagctgatcgctgctttctgccctggctggtg
aagcagcccagcgagcagggccagttgcgtgcacgtcaaatttctgctgcgcagatcaac
aagctggaggagctctggaaggacaacatcgacgccacgttccaggatctggagaagcct
ggcattgactcggagccctcgcaggtcctgctgcgctacgaggacggctaccagtacgag
aagacattcgggccgttggtgcgcctcgaggccgactacgacaagaagctgaaggagtcg
gccacccaggagaacatcgaagtgcgctgggatgtgggcctcaacaagaagaccatcgcc
tacttcaccctggccaaaacggactcggacatgaagctgatgcacggcgacgagctgcgt
ctccgttacgtgggcgagatgtacagtccgtggaacgagatcggacatgtgattaaagtg
cctgacaattttggtgacgacatcggcctggagctgaagtcatccaccaatgccccagtc
aagtgttccagcaacttttcggtggactttatctggaagtgcacctcctttgaccgcatg
acgcgcgccctccgcacctttgcgatggaccgccaatcagtgtcgaattttatttactcg
cgcctgctgggccatggccgacccgatgccaacgatgatgtgctcttccgcggcgcccag
ccgaagctgttcagcgcccccaacttgccggacctcaatcgcagtcaggtgtacgccgtg
aagcatgccctgcagcgacccttgagccttatccaaggtccccctggcaccggcaagacc
gtcacctctgccaccattgtgtaccagctggtgaagcagcacggcggcactgttctcgtg
tgtgcgcccagcaacacggccgtcgatcagctcacagagaagatccatcgcaccaatctc
aaggtggtacgcgtctgtgccaagagccgcgaggctatcgatagcccggtcagctttctg
gcgctgcacaatcagatccgcagcatggagaccaacacggagctgaagaagttgcagcag
ctcaaggacgaaactggagagctaagctccgcggatgagaagcgctaccgtaatctgaag
cgcggcaccgaaaaccaactgctggaggccgccgacgtcatctgctgcacctgcgtgggc
gccggcgatggccgcttgtcgcgcatcaaatttacttccattttgattgacgaatccatg
cagtccactgagcccgagtgcatggtgcccgtggttctgggagccaagcaactgattcta
gtcggcgatcactgccaactggggccggtggtcatgtgcaagaaggccgctcgcgctggc
ctttcgcagagtttgttcgaacgtctggtggtgctgggcatacgaccgtttcgcctcgaa
gtgcaatatcgcatgcacccagagctgtcgcagtttccctcgaacttcttctacgaggga
tcgctgcagaatggcgtgtgcgccgaggatcgacgcctcaagctggactttccctggccg
cagccggagaggccaatgtttttcctcgtcacccagggacaagaggagattgccggctcg
ggcacatcgtttctcaatcgcaccgaggcggccaatgtggagaagattacgacgcgcttc
ctgaaggcgggcatcaagcccgaacagatcggcatcatcaccccctacgagggacagcgg
gcgtatctggtgcagtacatgcagtatcagggcagccttcactcgcgcctctaccaggag
attgagattgccagcgtggatgcgttccagggacgcgagaaggacatcatcattatgtcg
tgtgtgcgatccaatgagcgtcagggcattggattcctcaacgatccgcgacgcctgaat
gtggccctgacccgtgccaagtacggcatcataattgtcggtaatcccaaggtcttggcc
aagcagcagctgtggaatcacctgctcaacttttacaaggatcgcaaggtgctggtcgag
ggctcactgaacaacctcaaggagtccctcatccacttccagaagcccaagaagctcgtg
aataccatgaacatgggcgcccattttatgtccacaatggtggccgatgccaaggaggtg
atggtccctgggtctgtctacgatcgcagcggctcctacaatcagagccgtcccattgcc
tccgcctccaatcaggtgcatcagcatcagaacggtggcaatttcgggagtccctatcat
agctcccccctggggtatggggctcccagcagcatcggcaatgctggtgccatggcacca
gcccaaggcggaggaggagccggcggcaatggcaacggaggaggagggaatggcaacaac
aactatggaaacgcgtcaaacagcatctctgcgggtggcggaggtgccggcaccggcaac
aattggaccaccgcacagcagcctcttatgcagcacgattcgattagctatatatcgaac
gagcatggtgccgccgccctcaacaacatgcccgtgccagtgggcatgttcatgaacatg
agcaatctgccgccgcggttctacaatcagcatcagcaggccatatcggcggccaagcag
aaccgtggcctgccgccgccgccatcgtcgacggggggtaatttcgccatgactgggggc
cccggcaatggactcaatcctgggcccaacgttggcaacggttcagccagcagcagcaac
cacttgggtggcgggggcagcaagaagaagttcccaaagaaccgtggagcggatctggca
cagtccgtcagcactgggacaccgttcagccagcagccggcaccgatgtccctgcagatg
acccagcccggtggctatacgctgtcgcagcagccagagatgtcacaggattatgggcag
atctcccaaatggatggattgctctcccaagatgtgtccttcagtgtgtcgggcgaacgc
agtttgaatcagttctcgcagccttattga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (2)   
   KEGG ENZYME (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (3)   
   RefSeq(pep) (3)   
DNA sequence (3)   
   RefSeq(nuc) (3)   
Protein domain (20)   
   Pfam (20)   
All databases (37)   

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