KEGG   Dehalococcoides mccartyi CG4: X793_03060
Entry
X793_03060        CDS       T03648                                 
Name
(GenBank) DNA topoisomerase I
  KO
K03168  DNA topoisomerase I [EC:5.6.2.1]
Organism
dmy  Dehalococcoides mccartyi CG4
Brite
KEGG Orthology (KO) [BR:dmy00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:dmy03032]
    X793_03060
   03400 DNA repair and recombination proteins [BR:dmy03400]
    X793_03060
Enzymes [BR:dmy01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.1  DNA topoisomerase
     X793_03060
DNA replication proteins [BR:dmy03032]
 Prokaryotic type
  DNA Topoisomerases
   X793_03060
DNA repair and recombination proteins [BR:dmy03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHIIR (short-homology-independent illegitimate recombination)
     Facilitator
      X793_03060
SSDB
Motif
Pfam: Topoisom_bac Toprim zf-C4_Topoisom zinc_ribbon_9 zf-ribbon_3 Toprim_4 RNA_POL_M_15KD DUF2207_C Toprim_2
Other DBs
NCBI-ProteinID: AII59357
Position
complement(582576..584687)
AA seq 703 aa
MKEKLVIVESPAKARTISKMLGKDFNIMATMGHIRDLPKSTLGVDVENSFTPKYVSLKAK
AKVIKELKDAVKNSKAIYLATDPDREGEAIAWHISEVTKANLAKPKRVVFHEITKEAIDK
AFKNTRELDMDLVNAQQARRVLDRLVGYKLSPLLWRKVQRGLSAGRVQSVSLKIIVDRER
EIEKFVSAEYWNIEALLNKKVKSAAFKASLAGYVTKGKLEIHNESEAEQIKKELEVSDYQ
VLKIKKKSNLRQSPAPFITSTLQQEAWRKLHFSAKQTMVIAQQLYEGLNIEGEGEVGLIT
YMRTDSTNVARTAVAETRDYISEKYGQAYLPKQARVFSSKVKGAQEAHEAIRPTRITRTP
DLIKKSLSAEQFKLYQLIWQRMMASQMSPAAFDNTTIDIEAKHQPSKTRYLLKTTSSVNT
FPGFTIVYIEGKDEDEEAAQSSLPPIEEGEELKLKSLEASQHFTQPPPRYTEATLIKALE
QYGIGRPSTYAPTISTIQEREYITKLKGSLKPSELGMLVNDLLVEYFPDIIGIDFTAAME
TELDKIATEKLDWVPIIRRFYEPFIKEIEAASEKIEKIKPPEEELDELCPECNAKLVVKR
GRFGKFIACSRYTKEEGGCRYTRSYQIKTGAKCPECNSDIVEKYSKKGKIFYGCAGYPNC
KFVSFYKPLSKPCPECGALMTKSGKNWAKCTKCGKRKKLEDES
NT seq 2112 nt   +upstreamnt  +downstreamnt
atgaaagaaaaacttgttatcgttgagtcacctgccaaagcccgtactatcagcaaaatg
ctgggcaaagactttaatattatggccaccatggggcatatacgggatttacccaaaagc
accctgggcgtagatgttgaaaacagttttacccccaagtatgtctccttgaaagccaag
gccaaggtcataaaggaactcaaagacgcagttaaaaattccaaggcaatctacctggct
accgaccctgaccgcgaaggtgaggctattgcctggcatatatccgaagttaccaaagcc
aatctggctaagcccaaacgggtggtctttcacgagattaccaaagaagccatagataag
gcttttaaaaacacccgcgaactggatatggatttggtaaatgcccagcaggcccggagg
gtgcttgaccggctggtaggttacaaattaagcccgctgctctggcgaaaggtacaacgg
ggactttcagccggacgggtgcagtctgtttccctgaaaataattgttgaccgcgaacgg
gaaatagaaaaatttgtatctgccgaatactggaatatagaagccctgctgaataaaaag
gttaaatcagccgctttcaaagcttctctggcaggttatgtaaccaaaggcaaactggaa
atacataacgaatctgaagccgaacaaattaaaaaagaactggaagtatctgactatcag
gtactgaagataaaaaagaaatcaaacctcaggcagtcccccgccccctttattaccagc
acccttcagcaggaggcctggcggaagctccatttttcagccaagcaaaccatggtgata
gcccagcagctgtatgaaggcctgaatatagagggcgaaggggaagtgggtcttataacc
tatatgcgtactgattctaccaacgtagcccgtaccgccgtagccgaaacccgtgattat
ataagtgaaaaatacggccaggcttacctgcccaaacaggccagagtattttcaagcaag
gttaagggcgcacaggaagcccatgaagctatccgccctacccgtataacccgcacccct
gacttgataaaaaagagcttgtctgccgaacagttcaaactttaccagcttatctggcag
cgtatgatggccagccagatgagcccggccgcctttgataatactacaatagacatagag
gccaaacaccagccatcaaaaacccgttatctgcttaaaaccaccagttcggtaaatact
tttccgggttttaccattgtatatatagaaggcaaggacgaagatgaagaagcggcgcag
tccagcctgccgcccatagaagaaggcgaagagctgaagctgaaaagcctggaggccagc
cagcactttacccagcctcctccccgttatacagaggctacgctgataaaagcgctggag
caatacggcataggccgccccagcacctacgcccccactatttccacaatacaggaacgg
gaatacattaccaagctcaaaggcagccttaaacccagtgaactgggaatgctggtaaat
gacctgctggtagagtatttcccggatattatcggtatagattttacggccgccatggaa
accgaactggacaaaatagccactgaaaaactggactgggtgcctataatcaggcgtttt
tatgaaccttttataaaagagatagaagccgccagcgaaaaaattgaaaaaattaaaccg
ccggaagaagagctggacgagctttgccccgaatgcaatgccaagctggtagtaaaacgg
gggcgttttggtaaatttattgcctgctcacgttataccaaagaagagggcggctgccgt
tatacccgctcataccagataaaaacaggtgccaaatgccctgagtgcaattcggatata
gttgaaaaatacagcaaaaagggcaagatattttacggctgtgccggttacccgaactgc
aaatttgtatctttctacaagccgctaagcaaaccctgcccggaatgcggcgcccttatg
accaagagcggcaagaactgggccaaatgcaccaagtgcggcaaacgcaaaaaacttgaa
gatgaaagctaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (9)   
   Pfam (9)   
All databases (18)   

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