KEGG   Drosophila navojoa: 108655614
Entry
108655614         CDS       T05898                                 
Name
(RefSeq) 5'-3' exoribonuclease 1
  KO
K12618  5'-3' exoribonuclease 1 [EC:3.1.13.-]
Organism
dnv  Drosophila navojoa
Pathway
dnv03008  Ribosome biogenesis in eukaryotes
dnv03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:dnv00001]
 09120 Genetic Information Processing
  09122 Translation
   03008 Ribosome biogenesis in eukaryotes
    108655614
  09123 Folding, sorting and degradation
   03018 RNA degradation
    108655614
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:dnv03019]
    108655614
   03009 Ribosome biogenesis [BR:dnv03009]
    108655614
   03016 Transfer RNA biogenesis [BR:dnv03016]
    108655614
   03036 Chromosome and associated proteins [BR:dnv03036]
    108655614
Messenger RNA biogenesis [BR:dnv03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     108655614
  mRNA degradation factors
   5'-3' decay
    5' exonucleases
     108655614
Ribosome biogenesis [BR:dnv03009]
 Eukaryotic type
  Pre-60S particles
   RNases
    108655614
Transfer RNA biogenesis [BR:dnv03016]
 Eukaryotic type
  tRNA degradation factors
   Rapid tRNA decay (RTD) pathway factors
    108655614
Chromosome and associated proteins [BR:dnv03036]
 Eukaryotic type
  Gene silencing
   piRNA pathway
    108655614
SSDB
Motif
Pfam: XRN_N XRN_M XRN1_D2_D3 XRN1_D1 SH3_12
Other DBs
NCBI-GeneID: 108655614
NCBI-ProteinID: XP_030244627
Position
Unknown
AA seq 1264 aa
MGVPKFFRYISERYPCLSELAREHSIPEFDNLYLDMNGIVHNCSHPDDSNIHFHLEEAQI
FQDIYNYIDKLFYLIKPQKLFFLAVDGVAPRAKMNQQRSRRFRSAREAEQLEAKARQRGE
KREHERFDSNCITPGTEFMVRLQAGLRCFLRTKISQDPLWQKCRVILSGQETPGEGEHKI
MDYIRYMKAQPNFDPNTRHCLYGLDADLIILGLCTHELHFVVLREEVKFGRNVKRTSVEE
TRFFLLHLGLLREYLELEFHELSTPEQKLDVAQLIDDWVLMGFMVGNDFIPHLPCLHISS
NALPLLYKTYIRIYKQLGGNINEHGKLNLDRLQQFLHALSEVELQLFEEHSDDLKYMNAK
TEAFDVDIDDIKNDSGESFNEDLAALIDESMKLYEDDDDDVDPDDEQAVLRSEFQNYKRN
YYRNKFKNEMHEDLIAELSYHYISALQWVLDYYYRGVQSWDWYYPFHYAPFISDLNNIKN
TKVNFKMGKPFLPFQQLLAVLPAASVNLLPMAYHDLMLKPNSPLAEFYPTEFESDLNGKK
HDWEAVVLIPFIEEKRLLSAMADCEPQLSVEERERNRHGPMYQYDYNAKSQGPMKGLAPL
KSLQNVFCTEQARWSDEIALDLPKTVCVELANAARHVFFPGFPTMKHLEFDFELRHDRVK
VFEQPSRNQSMVLLPRQREAQDSLQSVAAQHLGQVVYIGWPHLIKAKVESVASRDKKVDR
DGMRSNEPRRFDSDCKSLEEHFTGRMAIKFPNYDVLIYIRTYTGSSVEFGQRGSVYMKDS
WSSVLTAYPAQGVVSDIKVRDNMHAHFNKIEQLFPTGSTVFFIGSPYAGSEGTVLDPMLV
YSCGRVQVNIRVGPEPELMPARLLQEERDRDFMNAYKVCRELNLNSKCLGRLTGTVWVVL
GPRREKMENVAKHNIGLQLKYPRLNEERAGYCRRINNQWFYSSLAVELIHSYIENFPAVV
EYFSSSGDRGEFVYEGDIFPNAIGQHLIENVANWVRQQPHMKVDRITCGSRTVCKETVEL
LIKAVDELRMLPVKNVKLQVKPHLLVKPNVTLADVYRKPGAVRLFDRVVVVRTIYMVPVG
ITATVIGIHPVSDPNPVRLECLNAVETFCELLFDRPVTNCGDIHGIADERIYKVPESALI
IISSLENNEMYQPKQQATMAASSPLQTRTDAMRRDWRDQQKQQPRFVTAASSKYNAITMN
TRIADEFYWPSDAPATSSASTSAQAAATAATAAAAAAAADQEAASSQKNQMHLQNWRSSS
KPTR
NT seq 3795 nt   +upstreamnt  +downstreamnt
atgggtgtacccaagttttttcgttatatcagcgaacgatatccttgcctcagtgaattg
gcgcgtgagcatagtattcctgagttcgacaatctctacctggacatgaacgggattgtc
cataactgctcgcacccggatgatagtaatatccacttccatttggaggaggcgcagatc
tttcaggacatttacaactacatcgacaagctcttctatttgatcaagccgcaaaagttg
tttttcctggccgtagatggcgtcgcaccacgtgccaaaatgaaccagcagcgcagcagg
cgctttcgctcggcccgcgaggcggagcaattggaggcgaaggcgcgacagcgtggcgag
aagcgcgagcacgaacgattcgacagcaactgcattacgccgggcacagagttcatggtg
cgattgcaggccggcctgcgctgctttctgcgcacgaaaatctcgcaggatcccctctgg
cagaaatgtcgggtcatactcagcggccaggagacacccggcgagggagagcacaagata
atggactacatacgctacatgaaggctcagcccaacttcgaccccaacacgcgtcactgc
ctctatggcctggatgccgatttgatcatccttggtctctgcacccacgagctgcatttc
gttgtgctgcgcgaggaggtgaagtttggccgaaacgtgaagcgtacctcagtagaggag
acgcgttttttcttgctccatctgggcctgttgcgcgaatatctggaactagagttccac
gagctgtcgaccccagagcagaagctcgatgttgcccaactgatcgatgactgggtcctg
atgggcttcatggtgggcaatgatttcataccgcacttgccctgcctgcacatctcgtcg
aacgccctgcccttgctctacaaaacgtacatccgcatctacaagcaactgggcggaaat
atcaatgagcatgggaaactgaatttggatcgattgcagcagttcctgcacgctctgagc
gaggtggagctgcagctcttcgaggagcacagcgacgatctcaaatacatgaatgccaag
acggaggcgttcgacgtggacattgacgacatcaagaatgacagcggcgagagcttcaat
gaggatctggctgcgctcatcgatgagagcatgaagctgtacgaggatgacgacgacgat
gtggatcccgacgacgagcaggcagtgctgcgcagcgaatttcagaactacaagcgcaac
tattaccgaaataagttcaagaacgaaatgcatgaggatctgattgccgagctgagctat
cattatatcagtgccctgcaatgggtactcgattattactaccggggcgttcagagttgg
gactggtattatccctttcactatgccccgttcatcagcgatttgaacaacattaagaat
accaaagtgaattttaagatgggcaaaccctttttgcccttccaacagctgctggctgtg
ctgccagcggccagcgtcaatctcctgccaatggcgtatcatgacctgatgctgaagccg
aacagtccgctggccgagttttatcccacggaattcgaaagtgatctgaatggcaagaag
cacgactgggaggccgtggtgctgatacccttcatcgaggagaagcgcctgctgagcgcc
atggccgactgtgagccgcagctgagtgtcgaggagcgcgagaggaatcgccatgggccg
atgtaccagtacgattacaacgcaaagtcccagggtccaatgaagggcctggcgccactc
aaatccctgcagaacgtcttctgcacggagcaggcccgttggtccgatgaaatcgccctc
gatttgccaaagactgtgtgcgtggagctggccaatgcggcccgccacgtcttctttcca
ggctttcctaccatgaagcatttggaattcgattttgagttgcgccacgaccgcgtcaag
gtcttcgagcagccgagccgcaaccaaagcatggtcctgctgccacgccagcgcgaagcc
caggactcgctccagtcggtggcggcccagcacctgggacaggtggtgtacattggctgg
ccgcacttgatcaaggccaaggtggagagcgtcgcgtcgcgcgacaaaaaggtggatcgc
gacggcatgcgctcgaatgagccgcgacgcttcgactcggactgcaagtcgctcgaggaa
cacttcaccggccgcatggccatcaagtttcccaactacgatgtgctcatctatatacgc
acctacaccggcagctcggtggagttcggccagcgcggcagcgtctacatgaaggactcg
tggagcagtgtcctaacggcgtacccggcgcagggcgtggtctccgacatcaaggtgcgc
gacaacatgcacgcacatttcaacaaaatcgaacagctcttcccgacgggcagcacggtc
ttcttcattggcagtccgtatgcgggcagcgagggcaccgtgctggatccaatgctcgtc
tacagctgtggccgtgtgcaggttaacatccgcgtgggccccgagccggagttgatgccc
gcacgtctcctgcaggaggagcgggatcgcgacttcatgaacgcgtacaaggtgtgccgc
gagctgaatttgaacagcaaatgcctggggcgtctcacgggcaccgtctgggtggtgctc
ggtccgcgccgtgagaaaatggagaacgtggccaagcacaacattgggctgcagctgaag
tatccccgcttgaacgaggagcgcgccggctactgccgccgcatcaacaaccagtggttc
tattcctcgctggccgtcgaactcatacattcctatattgagaactttccggccgtggtc
gagtacttctcgagcagcggcgatcgcggtgagttcgtctacgagggggacatctttccc
aacgcgattggccagcatctcatcgagaacgtggccaactgggtgcgccagcagccgcac
atgaaggtggaccgcatcacttgcggctcgcgcaccgtttgcaaggagaccgtcgagctg
ctgataaaggctgtcgatgagctgcgcatgctgcccgtcaagaatgtcaagctgcaggtg
aagccgcacctgctggtcaagccgaacgtcacgctggccgacgtctaccgcaagccgggc
gccgtgcgcctcttcgaccgtgtcgtggtggtgcgcaccatctacatggtgcccgtgggc
atcaccgccaccgtcatcggcatacacccggtctctgacccgaatcccgtgcgcctggag
tgcctgaacgcagtggagacgttctgcgagctgctcttcgatcgcccggtgaccaactgc
ggcgacatacacggcatagctgacgagcgcatctacaaggtgccggagagcgccttgatc
atcatcagctcgctcgaaaacaacgagatgtatcagcccaagcagcaggcaacaatggca
gcctcgtcgcccctccagacccgcacggacgccatgcgccgcgactggcgcgaccagcag
aagcagcagccgcgctttgtcacggccgcgagcagcaagtacaatgcgatcacgatgaat
acgcgcatcgccgacgagttctattggcccagcgatgcgccagccacgagctccgcctcg
acttcggctcaagcagcagccacagcagccacagcagccgcagcagccgcagcagcagat
caagaggcagcttccagccagaagaatcagatgcacttgcagaactggcgcagctcgagc
aagccgacgcgttga

  All links  
Ontology (5)   
   KEGG BRITE (5)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (5)   
   Pfam (5)   
All databases (18)   

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