KEGG   Dokdonia sp. Dokd-P16: DCS32_00575
Entry
DCS32_00575       CDS       T05432                                 
Name
(GenBank) transcription termination factor Rho
  KO
K03628  transcription termination factor Rho
Organism
dod  Dokdonia sp. Dokd-P16
Pathway
dod03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:dod00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    DCS32_00575
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:dod03021]
    DCS32_00575
   03019 Messenger RNA biogenesis [BR:dod03019]
    DCS32_00575
Transcription machinery [BR:dod03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     DCS32_00575
Messenger RNA biogenesis [BR:dod03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     DCS32_00575
SSDB
Motif
Pfam: Rho_RNA_bind ATP-synt_ab Rho_N NACHT OB_RNB AAA_25 Spore_III_AA AAA_22 AAA
Other DBs
NCBI-ProteinID: AWH72717
UniProt: A0A2S1Q816
Position
complement(133983..135755)
AA seq 590 aa
MFDISELKAKKLPELQEIAKGINVPKYRTLKKLDLVYRILDLQAADPKKIEAVVPKVKEA
AAQAPAPKTERKPREERKPRAPRPAKTAKDTKDAPAANTEEAKDAPAKGKSPVKKEAPAK
REPQAKREAVKREPAKGKGGDDTKTPQKRDNQKDTRNNDKRNSNDNRQSNDKRAPRDNNR
NSNTRANTPRNNRNQKDGNTHGNNGNKDSRNRYREPDYEFEGIIESEGVLDIMQDGYGFL
RSSDYNYLASPDDIYVSQSQIRLFGLKTGDTVLGVIRPPKEGEKYFPLIKVSKINGLNPN
IVRDRVSFEHLTPLFPTEKFNLADRQASISTRVMDMFAPIGKGQRGMIVSQPKTGKTMLL
KDVANAIAANHPEVYQIVLLIDERPEEVTDMQRNVNGEVVASTFDKEAHEHVKVANIVLE
KAKRLVECGHDVVILLDSITRLARAYNTVQPASGKILSGGVDANALHKPKRFFGAARNIE
GGGSLTILATALTDTGSKMDEVIFEEFKGTGNMELQLDRNIANRRIFPAIDLTSSSTRRD
DLLHSKDTTQRLWVLRKYLADMNPVEAMEFMSDRIKSTKNNEEFLISMNQ
NT seq 1773 nt   +upstreamnt  +downstreamnt
atgtttgatatttcagaattaaaagcaaagaagcttcccgagcttcaagagattgcaaaa
gggattaatgttcctaaatacagaacattaaaaaagctagaccttgtttacagaatactt
gatttacaagcagcagacccaaaaaaaattgaggcagtagtgcctaaagtaaaggaagca
gctgcacaagctcctgctcctaagacagaacgtaagcctagagaagagcgtaaacctcgt
gctccacgtccagcaaaaactgcaaaagataccaaggatgctcctgcagcaaacactgag
gaagctaaagatgctcctgcaaaaggaaaatctcctgtaaaaaaggaagctcctgcaaaa
agagaacctcaagcaaaaagagaagcggtaaaacgtgagcctgcaaagggtaaaggtgga
gacgatacaaagacaccacaaaaacgagataatcaaaaagatactcgtaataacgataag
cgcaacagcaatgacaaccgtcaaagcaatgataagcgtgcacctcgcgataataatcgc
aactcaaatacacgtgctaatacgccacgcaataaccgtaatcaaaaagacggaaatacg
catggtaacaatggtaacaaggatagccgtaaccgttaccgcgagccagattatgaattt
gaaggaattatagagagtgaaggagttttagatattatgcaagatggctacggctttttg
cgtagttctgactacaattaccttgcatctccagatgatatttatgtatcacaatcacag
ataagactttttggtcttaaaactggtgatactgtattaggtgtaatacgccctccaaaa
gaaggagaaaagtatttccctcttattaaagtaagtaagattaatggtttgaaccctaac
atcgttagagatcgtgtttcttttgagcacttaaccccattattccctacagaaaagttt
aacctagcagatcgtcaagcgagtatatctactcgtgtgatggatatgtttgcacctata
ggtaaaggtcaacgtggtatgattgtatcacaacctaaaacgggtaaaaccatgttactt
aaggatgtggcaaatgctattgcagcaaatcatcctgaagtataccaaattgtacttctt
atagatgaacgtccagaagaagttacagacatgcaacgtaatgtaaatggagaggtggta
gcctctacatttgataaagaagcgcatgagcacgtaaaagttgcaaacattgttcttgaa
aaagcaaaacgtcttgtggagtgtggtcacgatgtagtaatacttctagactctatcaca
cgtctcgcacgtgcatataataccgtacagccagcatctggaaagattctttctggaggt
gtagatgcaaatgcattacacaagcctaagcgtttctttggagcagcacgtaacatagaa
ggaggtggatcacttaccattcttgctactgcacttacagacacaggttcaaaaatggac
gaagtaatctttgaagaattcaagggtacaggtaacatggagctacaactggatcgtaat
attgcaaaccgccgtattttcccagcgatcgatcttacttcttcatctacacgtcgtgat
gacttactacacagtaaagacaccacgcagcgtctatgggtattacgtaaataccttgca
gatatgaatccagtagaagcaatggagttcatgagtgatcgtattaagagcacaaaaaat
aacgaggaattcttgatttcaatgaatcaataa

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (9)   
   Pfam (9)   
All databases (18)   

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