KEGG   Oryza sativa japonica (Japanese rice) (RAPDB): Os01t0611100-01
Entry
Os01t0611100-01   CDS       T02163                                 
Symbol
Os01g0611100
Name
(RAP-DB) Similar to GTP-binding nuclear protein Ran-2.
  KO
K07936  GTP-binding nuclear protein Ran
Organism
dosa  Oryza sativa japonica (Japanese rice) (RAPDB)
Pathway
dosa03008  Ribosome biogenesis in eukaryotes
dosa03013  Nucleocytoplasmic transport
dosa03250  Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:dosa00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    Os01t0611100-01 (Os01g0611100)
   03008 Ribosome biogenesis in eukaryotes
    Os01t0611100-01 (Os01g0611100)
  09125 Information processing in viruses
   03250 Viral life cycle - HIV-1
    Os01t0611100-01 (Os01g0611100)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:dosa03019]
    Os01t0611100-01 (Os01g0611100)
   03009 Ribosome biogenesis [BR:dosa03009]
    Os01t0611100-01 (Os01g0611100)
   03016 Transfer RNA biogenesis [BR:dosa03016]
    Os01t0611100-01 (Os01g0611100)
   03036 Chromosome and associated proteins [BR:dosa03036]
    Os01t0611100-01 (Os01g0611100)
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:dosa04147]
    Os01t0611100-01 (Os01g0611100)
   04031 GTP-binding proteins [BR:dosa04031]
    Os01t0611100-01 (Os01g0611100)
Messenger RNA biogenesis [BR:dosa03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Ran-mediated transport factors
     Os01t0611100-01 (Os01g0611100)
Ribosome biogenesis [BR:dosa03009]
 Eukaryotic type
  Pre-40S particles
   Export and cytoplasmic maturation factors
    Os01t0611100-01 (Os01g0611100)
  Pre-60S particles
    Os01t0611100-01 (Os01g0611100)
Transfer RNA biogenesis [BR:dosa03016]
 Eukaryotic type
  tRNA transport factors
   tRNA export factors
    Os01t0611100-01 (Os01g0611100)
Chromosome and associated proteins [BR:dosa03036]
 Eukaryotic type
  Centrosome formation proteins
   Centrosome duplication proteins
    Regulators of centriole replication
     Os01t0611100-01 (Os01g0611100)
   Spindle formation proteins
    Os01t0611100-01 (Os01g0611100)
Exosome [BR:dosa04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   Os01t0611100-01 (Os01g0611100)
GTP-binding proteins [BR:dosa04031]
 Small (monomeric) G-proteins
  Ran Family
   Ran
    Os01t0611100-01 (Os01g0611100)
SSDB
Motif
Pfam: Ras Roc Arf MMR_HSR1 RNA_helicase GTP_EFTU Pox_A32 ATPase AAA_24 ArgoMid AAA_16 Septin AAA_7 AAA_22
Other DBs
RAP-DB: Os01t0611100-01
Position
chr01:join(24187401..24187403,24187514..24187583,24188092..24188148,24188237..24188354,24188933..24189022,24189098..24189277,24189363..24189440,24189531..24189600)
AA seq 221 aa
MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG
KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTSRLTYKNVPTWHRDLCRVCENIPI
VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEVSAKSNYNFEKPFLYLARKLAGDGNLHFV
ETPALAPPDVTIDLAAQQQHEAELAAAAAQPLPDDDDDLIE
NT seq 666 nt   +upstreamnt  +downstreamnt
atggcgctcccgaatcagcagacggtggactaccccagcttcaagctcgtcatcgtcggc
gacggcggcacgggcaaaaccacctttgtgaagaggcatttgactggcgagttcgagaag
aagtatgagcctactatcggtgtggaggtccaccccttggatttcttcactaactgcggc
aagatccgcttctactgctgggatacagctggtcaggagaaatttggtggactcagggat
ggttactatatccatgggcagtgtgctatcataatgttcgatgttacttctcggctgacg
tacaagaatgtcccaacttggcaccgtgatttatgcagggtctgtgaaaacatcccaatt
gtgctctgtggtaacaaggttgatgtgaagaacaggcaggttaaagcaaagcaggttacc
ttccataggaagaagaacttgcagtactatgaggtgtcagctaagagcaactacaacttt
gagaagccattcctgtaccttgccaggaaacttgctggcgatggtaacctccactttgtg
gaaacacctgctcttgctcctccagatgtcacaattgatctagcagcccagcaacagcac
gaggctgaactggcagcggctgcagcccaaccactgccagatgatgacgatgacctgatc
gagtag

  All links  
Ontology (7)   
   KEGG BRITE (7)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   OC (1)   
   RAP-DB (1)   
Protein domain (14)   
   Pfam (14)   
All databases (28)   

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