KEGG   Oryza sativa japonica (Japanese rice) (RAPDB): Os02t0478900-00
Entry
Os02t0478900-00   CDS       T02163                                 
Symbol
Os02g0478900
Name
(RAP-DB) Similar to Splicing factor 3B subunit 1.
  KO
K12828  splicing factor 3B subunit 1
Organism
dosa  Oryza sativa japonica (Japanese rice) (RAPDB)
Pathway
dosa03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:dosa00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    Os02t0478900-00 (Os02g0478900)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:dosa03041]
    Os02t0478900-00 (Os02g0478900)
   03036 Chromosome and associated proteins [BR:dosa03036]
    Os02t0478900-00 (Os02g0478900)
Spliceosome [BR:dosa03041]
 Complex A
  U2 snRNP components
   U2 snRNP specific factors
    Os02t0478900-00 (Os02g0478900)
 Complex B
    Os02t0478900-00 (Os02g0478900)
 Complex C
   U2 SnRNP specific factors
    Os02t0478900-00 (Os02g0478900)
Chromosome and associated proteins [BR:dosa03036]
 Eukaryotic type
  Chromatin remodeling factors
   B-WICH complex
    Os02t0478900-00 (Os02g0478900)
SSDB
Motif
Pfam: SF3b1 HEAT HEAT_EZ HEAT_2 Htt_N-HEAT_1 XMAP215_CLASP_TOG Vac14_Fab1_bd
Other DBs
RAP-DB: Os02t0478900-00
Position
chr02:16450471..16453254
AA seq 927 aa
MADADGTPAPSVAWDSSSTPTPKKQRSRWDETPAGVGSTAPRATDAVTPAGYAPGPTPFD
AADLATPSPGQIARGPMTPEQYQLLRWERDIEGRNMPLTDEELDTMLPQVGYKILDPPAS
YQPIRTPARKLLATPTPLFTPLYAIPEENRGQQFDVPKELPGGLPQMKPEDYQYFGTLLN
EGEEEEKLSPEEHKERKILKLLFKVKNGTPQQRKAALRQLTDKAQEFGAGPLFNKILPLL
MQPTLEDQERHLLVKVIDRVIYKLDDLVRPFVHKILVVVEPLLIDEDYYARVEARQIISN
LSKAAGLATMIATMRPDIDNTDEYVRNTTARAFSVVASGLGIPALLPFLKAVCQSKKSWQ
ARHTGIKIVQQIAILMGCAVLPHLRSLVDIIEHGLSDENQKVRTITALSLAALAEAAAPY
GIESFDTVLRPLWKGTKSHRGKVLAAFLKAVGFIIPLMDVEYASYYTRGVIPILIREFQS
PDEEMKKIVLKVVKQCVSTEGVEADYIRNGILPEFFRHFWIRRMALDRRNYKQLVETTVE
IANKVGVADIVGRIVEDLKDESEPYRRMVMETIEKVVAHLGASDIDRHQEELLIDGIVYT
FQQQTSDDSNVILNGFETVANALGQRVKPYVPQICGIIKWMLNTSSAKARQRAADLMSRI
AIVMKLCQEERLMCHLGHILYESLGEEYPDVLGSILGALKAIVNVVGMTKMTPPIKDLLP
RLTPILKNRHEKVQENCIDLVGRVADRGAEFVPAREWMRICFELLEMLKAHKKGIRRATA
NTFGYIAKAIGPEDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRV
PEFNVRNGILKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTAASAVKHMALG
VAGLGCEDALVHLTLSGPTYLRHLPMS
NT seq 2784 nt   +upstreamnt  +downstreamnt
atggctgatgcggatggaacccctgcaccgtccgtggcgtgggattcttcttccacccca
acgcccaagaagcagagatcaaggtgggatgagacgcctgcgggtgtggggagcacggca
cctcgcgctaccgatgctgttactcctgcaggttatgctcctgggccaaccccgttcgac
gcggcggacctcgccacgccgtcacctggccagattgctcgtggcccgatgacaccggag
cagtaccagctcttgcggtgggagcgggacatcgaggggcgtaacatgcctctgactgat
gaggaacttgacaccatgctcccgcaggtggggtacaagattcttgatcctccggcttct
tatcagcccatacgcacacccgcaaggaagcttctcgcgacgccgacaccgctgtttaca
ccgctctatgccatccctgaggagaaccgtgggcagcagtttgatgtgcccaaggagttg
cctggtgggttgccacaaatgaagccggaggattaccagtactttggaacattgctgaac
gagggagaggaagaggagaagctgtcaccagaggagcataaggagaggaagatcttgaaa
ctcctgttcaaggtgaagaatggcacaccacaacagcggaaagcggcgcttcgacagctc
acggacaaggcgcaggaatttggtgctggcccgctgttcaacaagatcctgccgttgctc
atgcagccaacgcttgaggaccaggagcgtcatcttctggtgaaggtcattgatagagtg
atatacaagctggatgatctggttcgtccgtttgtgcataagattcttgtggttgttgag
ccacttctgattgatgaggattactatgctcgtgttgaggcccggcagattatctcaaat
cttagcaaagcagctggacttgctactatgattgccaccatgagaccagatattgataac
actgatgagtatgtgaggaataccactgctagggcattcagtgtggttgcttctggtttg
gggattcctgctctcttgccattcttgaaggctgtctgccagagtaaaaagtcttggcag
gctcggcacactggtattaagattgttcagcagattgctattctcatgggctgtgctgtt
ctgccacacctcaggtccttagttgatatcattgagcatggtctgagtgatgaaaaccag
aaagtacggacaatcaccgcactgtctcttgctgcacttgctgaggctgccgcaccctat
ggtatagaaagttttgatacggtgttgaggcctttgtggaagggtaccaaatctcaccgt
ggaaaggtccttgctgctttcttgaaagccgttggtttcatcatccctcttatggatgtt
gaatatgccagttactacaccaggggggtgattccaatcctgattagggagttccagtca
ccagatgaagagatgaaaaagattgtcctgaaggttgttaaacaatgtgtcagtacagag
ggtgtagaggctgactatatccgtaatggcatccttccagagttcttccgtcacttttgg
ataaggagaatggctctagatcgtaggaactataaacaacttgtggaaacaacagtggag
attgcaaacaaggttggagttgctgacatcgttgggaggattgttgaggatctcaaagat
gaaagtgaaccttacaggagaatggtgatggaaacaattgagaaggtggtggctcacctg
ggtgcctcagatattgatcgccatcaggaggagcttcttattgatggcatcgtgtatact
ttccaacagcagacaagtgatgattcaaatgtcatacttaatgggtttgaaacagttgcg
aatgcacttggccagagggttaagccttatgttcctcagatttgtggtatcatcaagtgg
atgctgaacacctcgagtgcaaaagctaggcagcgagctgctgatctgatgtcaaggata
gccattgtgatgaagctgtgccaagaggagcggctgatgtgtcacttgggtcatatatta
tatgagtccttgggggaggagtatcctgatgtgctgggttcaatccttggagctttaaag
gctatcgtgaatgttgttggtatgacaaagatgacgccaccaatcaaagatcttcttcct
cggttgaccccaatcttaaagaataggcatgaaaaggtccaagagaactgtattgattta
gttggtagggttgctgatcgtggagcagagtttgtgccagccagggaatggatgaggatt
tgcttcgagctgcttgaaatgttgaaggctcacaagaagggtattagacgagccactgcg
aacacatttggctatattgcgaaggctattgggccagaggatgtgttggccactctattg
aacaacttgaaggtgcaggagcgtcagaaccgagtttgcactactgtcgcaatcgccatt
gttgctgaaacttgctccccctttacagttttgcctgcccttatgaacgagtaccgagta
ccagagttcaatgtccgtaatggtattttgaagtctctgtcatttctttttgaatacatt
ggtgagatgggtaaagattacatatatgctgtcacgccattgcttgaagatgctctgatg
gatagagatctggttcatcggcagactgctgcctctgctgttaagcacatggcactaggt
gttgctggcttgggttgtgaggatgctcttgtccacttaaccttgtctggcccaacatat
ttgagacatctccccatgtcataa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   OC (1)   
   RAP-DB (1)   
Protein domain (7)   
   Pfam (7)   
All databases (15)   

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