KEGG   Oryza sativa japonica (Japanese rice) (RAPDB): Os03t0852900-01
Entry
Os03t0852900-01   CDS       T02163                                 
Symbol
Os03g0852900
Name
(RAP-DB) Similar to Cleavage and polyadenylation specificity factor, 73 kDa subunit (CPSF 73 kDa subunit).
  KO
K14403  cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
dosa  Oryza sativa japonica (Japanese rice) (RAPDB)
Pathway
dosa03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:dosa00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    Os03t0852900-01 (Os03g0852900)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:dosa03021]
    Os03t0852900-01 (Os03g0852900)
   03019 Messenger RNA biogenesis [BR:dosa03019]
    Os03t0852900-01 (Os03g0852900)
Transcription machinery [BR:dosa03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Transcription termination factor
     Os03t0852900-01 (Os03g0852900)
Messenger RNA biogenesis [BR:dosa03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     Os03t0852900-01 (Os03g0852900)
    U7-dependent histone pre-mRNA processing factors
     Os03t0852900-01 (Os03g0852900)
SSDB
Motif
Pfam: CPSF73-100_C Beta-Casp Lactamase_B Lactamase_B_6 RMMBL Lactamase_B_2 Lactamase_B_3 Beta_lactamase3 DUF2594 DUF3213
Other DBs
RAP-DB: Os03t0852900-01
Position
chr03:complement(join(35911510..35911680,35911293..35911390,35911142..35911187,35910890..35911039,35908973..35910610))
AA seq 700 aa
MASSVAAAAAPTAGGPPGKRQASGGREGDQLIITPLGAGNEVGRSCVYMSFKGRTVLFDC
GIHPAYSGMAALPYFDEIDPSTIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKA
IYRLLLSDYVKVSKVSVEDMLFDEQDILRSMDKIEVIDFHQTLEVNGIRFWCYTAGHVLG
AAMFMVDIAGVRVLYTGDYSREEDRHLKAAELPQFSPDICIIESTYGVQQHQPRHVREKR
FTDVIHTTVSQGGRVLIPAFALGRAQELLLILDEYWANHPELHKIPIYYASPLAKKCMAV
YQTYINSMNERIRNQFAQSNPFHFKHIESLNSIDNFHDVGPSVVMASPGGLQSGLSRQLF
DKWCTDKKNSCVIPGYVVEGTLAKTIINEPREVTLANGLTAPLHMQVHYISFSAHADFPQ
TSTFLDELQPPNIVLVHGEANEMSRLKQKLISQFDGTNIKVVNPKNCQSVEMYFSSEKMA
KTIGRLAEKVPEAGESVNGLLVKKGFTYQIMAPEDLRVYTQLSTANITQRIAVPYSGSFE
VIKYRLKQIYESVESSTEESDVPTLIVHERVTIRLESESYVTLQWSSDPISDMVSDSVVA
MVLNIGREGPKVVPVEEAVKTQEETERVAQKVVYALMVSLFGDVKVAEEGKLVISVDGQV
AHLDGRSGGVECENATLRERIKTAFRRIQGAVRPIPLISS
NT seq 2103 nt   +upstreamnt  +downstreamnt
atggcgtcgtccgtcgccgccgccgccgcaccgaccgccggggggccgccggggaagcgg
caggcctccggcgggcgggagggagaccagctcatcatcactccgctgggcgccggcaac
gaggtcggccgctcctgcgtctacatgtcattcaagggccgcaccgtcctcttcgattgc
ggcatccacccggcttactccggcatggcggcgctcccctacttcgatgagatcgatccc
tccaccattgatgtcctcctaatcacccactttcacttggaccatgctgcctctcttccc
tacttcttggagaagacgacattcaaggggcgcgtgttcatgacccatgccacaaaggcc
atctacaggctgctcctttccgattatgtcaaagtcagcaaagtttctgtggaggatatg
ctgtttgacgagcaagacattcttcgttccatggataaaattgaggtcatagacttccac
cagacattggaagttaatggcatacgcttctggtgctatactgctggccatgtacttggc
gctgcaatgttcatggtggacattgctggggttcgcgttctttacactggtgactactcc
cgtgaggaagatcgccacctgaaagctgctgaacttccccagttctcccctgatatttgc
attatcgagtcaacttatggcgtgcagcagcaccaaccccgccatgtacgagagaagcgc
ttcactgatgtaatacacacgaccgtctcgcagggtggtcgcgttcttatcccagccttt
gctcttggaagagctcaagagctgctacttatcctggatgagtattgggccaaccaccca
gagctccataagattccaatctattatgcctcccctcttgccaagaaatgcatggctgtc
taccagacatacatcaactccatgaatgaaaggattaggaaccagtttgcacaatctaat
cccttccatttcaagcatattgagtctttgaatagcatagataactttcatgatgtgggt
ccatcagtggttatggcaagcccaggtggtctccagagtggcctctccaggcagctcttt
gacaaatggtgcacagataagaagaattcatgtgttattccaggttatgttgtggaaggc
acccttgcaaagaccattattaacgagccaagagaagtgacactggcgaatgggctcact
gctcctcttcatatgcaggtccactatatttccttttctgctcatgctgatttccctcag
acaagcaccttcttggatgagctccagccacccaacattgttcttgtacacggggaagca
aatgagatgtcaagacttaagcagaagcttatttctcagtttgatgggacaaatataaaa
gttgttaaccccaagaattgccaatcagtggagatgtatttcagttctgagaaaatggcc
aagacaattggcaggttggctgaaaaggtaccggaagctggagaatcagttaatggcttg
cttgtaaagaagggattcacatatcaaattatggctcctgaggatctccgtgtgtacacg
cagctatctacagctaacattacccaaaggattgccgtcccatattctggttcttttgaa
gtcataaagtacagactgaagcaaatatatgagagcgtggagtcatcaacagaggagtct
gatgttccaacattgattgtgcatgagagagtgaccattcgcctggaatcagaaagctat
gttacattgcagtggtcgtctgatcctatcagtgatatggtgtctgattctgtggtcgcc
atggtcttgaacataggccgtgaaggtcccaaagttgtcccagttgaagaagcagtgaag
acacaggaagagacggaaagggtggcccagaaggtagtttatgctcttatggtgtcactt
tttggtgatgtcaaagttgcagaggaagggaaacttgttatatctgtggatggacaagta
gcacacttggatgggaggagtggtggtgttgaatgtgaaaatgctacactgagagaaagg
atcaagactgcattccgtcgtatacagggtgctgtgagaccaatcccgcttatatcttct
tga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   OC (1)   
   RAP-DB (1)   
Protein domain (10)   
   Pfam (10)   
All databases (18)   

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