KEGG   Oryza sativa japonica (Japanese rice) (RAPDB): Os05t0154800-01
Entry
Os05t0154800-01   CDS       T02163                                 
Symbol
Os05g0154800
Name
(RAP-DB) Similar to U1snRNP-specific protein, U1A.
  KO
K11091  U1 small nuclear ribonucleoprotein A
Organism
dosa  Oryza sativa japonica (Japanese rice) (RAPDB)
Pathway
dosa03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:dosa00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    Os05t0154800-01 (Os05g0154800)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:dosa03041]
    Os05t0154800-01 (Os05g0154800)
Spliceosome [BR:dosa03041]
 Complex A
  U1 snRNP components
   U1 snRNP specific factors
    Os05t0154800-01 (Os05g0154800)
 Complex B
    Os05t0154800-01 (Os05g0154800)
SSDB
Motif
Pfam: RRM_1 RRM_5 DUF4523 RRM_occluded Calcipressin xRRM CHASE8
Other DBs
RAP-DB: Os05t0154800-01
Position
chr05:join(3210716..3210827,3211368..3211540,3211862..3211955,3212749..3212840,3213542..3213832)
AA seq 253 aa
MSGEVAAAVGGGAPEENGAPPNVTIYINNLNEKIKLEELKKSLRAVFSQFGKILDVLAFK
TLKHKGQAWVVFEDVASATEALKSMQDFPFHNKPMRIQYAKTKSDIIAKADGTFVPRERR
KRNDEKPEKKQKREQHHDVSQVGLGVNAYPGVYGAPPLSQLPFAGAQKVMMPEIIVPNNI
LFVQNLPHETTPMMLQMLFCQYPGFKEVRMVEAKPGIAFVEYGDEGQATAAMNHLQGFKI
TKDNQMLISYAKK
NT seq 762 nt   +upstreamnt  +downstreamnt
atgagcggcgaggtggcggcggcggtcggcggtggcgccccggaggagaacggcgcccct
ccgaacgtcaccatctacatcaacaacctcaacgagaagatcaagctcgaggaacttaag
aaatcgctccgcgctgttttctcccagtttgggaagattcttgatgttctcgctttcaag
actttgaagcataaaggccaagcctgggttgtgtttgaagatgttgcttcagcaactgag
gctttgaagagcatgcaagacttccccttccataataaacctatgagaatccaatatgcc
aagaccaaatcggatattatagcaaaagctgatggcacctttgtacctcgagaaagaagg
aagaggaacgatgagaaacctgaaaagaagcagaagcgtgagcagcaccatgatgtgagt
caagttggcttaggtgtgaatgcttaccccggtgtttatggagctcctccgctctctcag
ctaccttttgctggcgcacagaaggtcatgatgccggagataattgtaccgaataacatc
ctcttcgtccaaaacctcccacatgagacgacccctatgatgcttcagatgctcttctgt
cagtacccagggttcaaggaagtcagaatggttgaagcaaagcctgggattgctttcgtg
gagtacggcgacgaggggcaggctaccgctgccatgaaccatcttcaggggttcaaaatt
acgaaagataaccagatgcttatctcgtatgcgaagaagtaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   OC (1)   
   RAP-DB (1)   
Protein domain (7)   
   Pfam (7)   
All databases (14)   

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