KEGG   Oryza sativa japonica (Japanese rice) (RAPDB): Os08t0430200-01
Entry
Os08t0430200-01   CDS       T02163                                 
Symbol
Os08g0430200
Name
(RAP-DB) UV excision repair protein Rad23 family protein.
  KO
K10839  UV excision repair protein RAD23
Organism
dosa  Oryza sativa japonica (Japanese rice) (RAPDB)
Pathway
dosa03420  Nucleotide excision repair
dosa04141  Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:dosa00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    Os08t0430200-01 (Os08g0430200)
  09124 Replication and repair
   03420 Nucleotide excision repair
    Os08t0430200-01 (Os08g0430200)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03051 Proteasome [BR:dosa03051]
    Os08t0430200-01 (Os08g0430200)
   03400 DNA repair and recombination proteins [BR:dosa03400]
    Os08t0430200-01 (Os08g0430200)
Proteasome [BR:dosa03051]
 Eukaryotic proteasome
  Proteasome interacting proteins (PIPs)
   UBL-UBA shuttle proteins
    Os08t0430200-01 (Os08g0430200)
DNA repair and recombination proteins [BR:dosa03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     XPC-HR23B-CETN2 complex
      Os08t0430200-01 (Os08g0430200)
SSDB
Motif
Pfam: XPC-binding UBA ubiquitin Rad60-SLD BAT2_N CUE Ubiquitin_4 Crinkler UBA_3
Other DBs
RAP-DB: Os08t0430200-01
Position
chr08:join(20797084..20797149,20798393..20798554,20798757..20798807,20799337..20799401,20799626..20799700,20799844..20800021,20800412..20800594,20800677..20800790,20800868..20800977,20801067..20801145,20801276..20801413)
AA seq 406 aa
MKVSIKTLKGSSFEIDVEPTSKVSDVKKLIEVTQGDNVYPADQQMLIHQGNVLKNDTTLE
ENKVVENNFIVIMLSKKGSSSAASSTAKEPTKQPSVDRAIPTAPATQPPAPPAPVSEPVT
APVPTATTASAPAAAVTAASTEADNYGQAASNLVAGSNLEGTVQSILEMGGGAWDRDTVM
RALRAAYNNPERAVEYLYTGVPEQAEAPAAVQALPVPAAVQALPVPAAVQPVDPSQAPQS
AQLSIPSSGPNANPLDLFPQVLPNASANAGGGNLDVLRNNSQFRGLLSLVQANPQILQPL
LQELGKQNPQILQLIQENQAEFLRLINEPAEGAEGNLLDQFAAGMPQTVAVTPEENEAIQ
RLEQMGFDRDLVLEVFFACNKDELLAANYLLDHMNEFDDDAPEPPQ
NT seq 1221 nt   +upstreamnt  +downstreamnt
atgaaggtctccatcaaaacgctcaagggctccagcttcgagatcgacgtcgagcccacc
agcaaggtcagtgatgttaaaaagctcatcgaggttacgcaaggagataatgtctacccc
gctgatcagcaaatgctgatccatcaagggaatgtccttaaaaacgacacaacacttgaa
gagaacaaagttgttgagaacaacttcattgtgataatgttatctaagaagggatcatca
agtgctgcttcaagtacagctaaggagcccacaaaacagccctcagttgaccgggcgata
cccactgcgcctgcaacccaaccacctgctccaccagcacctgttagcgagcctgtgact
gcaccagttccaactgcaacaactgcttcagctccagcagctgctgtcaccgctgcatcc
accgaagcagataattatggtcaagctgcgtcgaaccttgttgctggaagcaatttagaa
gggactgttcagtcaattcttgaaatgggtggaggagcttgggaccgtgacactgttatg
cgtgctctgcgagctgcatacaacaatccagaacgggctgtggagtatttgtacaccggg
gttcctgagcaagctgaggcccctgctgcagttcaagcacttcctgtccctgctgcagtt
caagcacttcctgtccctgctgcagttcaaccagttgacccaagccaggctccccaatca
gctcaactttcaattccatcatctggacccaatgccaatccattggacctgtttcctcag
gtccttccaaatgcttctgcaaatgctggtggtggaaatcttgatgttctgcgaaacaat
tcacagttccgtggcttgctttctttggtgcaggctaaccctcaaattctgcagcctttg
cttcaagagttggggaaacaaaatccacagattttgcaactgattcaggaaaaccaggct
gagttcctgcgcttaatcaacgaacctgcagagggagctgaagggaacttgctagaccag
tttgctgcgggaatgcctcaaacagtggctgtcacacctgaggagaacgaagccatacaa
cgtctggaacaaatggggtttgatcgcgatctggtcctggaggtattcttcgcgtgcaac
aaggatgagctgttggccgcaaactatctcttggaccacatgaacgagttcgacgacgac
gcccctgaaccaccgcaataa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   OC (1)   
   RAP-DB (1)   
Protein domain (9)   
   Pfam (9)   
All databases (18)   

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