KEGG   Oryza sativa japonica (Japanese rice) (RAPDB): Os12t0540900-01
Entry
Os12t0540900-01   CDS       T02163                                 
Symbol
Os12g0540900
Name
(RAP-DB) Similar to Tryptophanyl-tRNA synthetase (EC 6.1.1.2) (Tryptophan--tRNA ligase) (TrpRS).
  KO
K01867  tryptophanyl-tRNA synthetase [EC:6.1.1.2]
Organism
dosa  Oryza sativa japonica (Japanese rice) (RAPDB)
Pathway
dosa00970  Aminoacyl-tRNA biosynthesis
Brite
KEGG Orthology (KO) [BR:dosa00001]
 09120 Genetic Information Processing
  09122 Translation
   00970 Aminoacyl-tRNA biosynthesis
    Os12t0540900-01 (Os12g0540900)
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01007 Amino acid related enzymes [BR:dosa01007]
    Os12t0540900-01 (Os12g0540900)
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:dosa03016]
    Os12t0540900-01 (Os12g0540900)
Enzymes [BR:dosa01000]
 6. Ligases
  6.1  Forming carbon-oxygen bonds
   6.1.1  Ligases forming aminoacyl-tRNA and related compounds
    6.1.1.2  tryptophan---tRNA ligase
     Os12t0540900-01 (Os12g0540900)
Amino acid related enzymes [BR:dosa01007]
 Aminoacyl-tRNA synthetase
  Class I (G)
   Os12t0540900-01 (Os12g0540900)
Transfer RNA biogenesis [BR:dosa03016]
 Eukaryotic type
  Aminoacyl-tRNA synthetases (AARSs)
   Other AARSs
    Os12t0540900-01 (Os12g0540900)
 Prokaryotic type
    Os12t0540900-01 (Os12g0540900)
SSDB
Motif
Pfam: tRNA-synt_1b
Other DBs
RAP-DB: Os12t0540900-01
Position
chr12:complement(join(21629310..21629548,21629081..21629200,21628284..21628469,21628097..21628148,21627832..21627984,21627507..21627599,21626920..21627000,21626693..21626764,21626222..21626290,21626001..21626111,21625748..21625798))
AA seq 408 aa
MAAAAEAVTEVDATNEEGEEEEQVVNPWEVSAGKGGIDYDKLVDQFGCQRLDDALVARVA
RLTARPPHRFLRRGLFFAHRDLNEILDLYEKGEKFYLYTGRGPSSEALHLGHLIPFMFTK
YLQDAFKVPLVIQLTDDEKFLWKNLTVEETKRLARENAKDIIACGFDVERTFIFSDFNYV
GGAFYENMVKVARCVTYNKVVGIFGFTPEDHIGKVSFPPVQAVPSFPSSFPHLFSGNDQL
RCLIPCAIDQDPYFRMTRDVAPRIGYQKPSLIESRFFPALQGENTKMSASDPNSAIYVTD
SAKEIKTKVNKYAFSGGRDSIELHRKLGANLDVDVPIKYLNFFLEDDNELEHIKKEYKEG
RMLTGEVKQRLVAVLSELVARHQRARALVTEEMVDVFMAARPLPNMFG
NT seq 1227 nt   +upstreamnt  +downstreamnt
atggcagcggcagcggaggccgtgaccgaggtggatgccacgaacgaggagggggaggag
gaggagcaggtggtgaacccgtgggaggtgtcggcggggaaaggcgggatcgactacgac
aagctcgtcgaccagttcggctgccagcgcctcgacgacgcgctcgtcgcccgcgtcgcc
cgcctcaccgcccgcccccctcaccgcttcctccgccgcggcctcttcttcgcccaccgg
gatttgaacgagatactggatttgtacgagaagggggagaagttctacctctacacgggg
agggggccctcgtcggaggcgctgcacctcggccatctcatccccttcatgttcaccaaa
tatctgcaggatgctttcaaggtgcccctagtaatacagctaactgatgatgagaagttc
ttatggaagaatttgactgttgaggaaactaaaaggcttgcccgtgaaaatgcaaaagat
atcattgcttgtggatttgatgtcgaaaggactttcattttctctgattttaattatgtt
ggaggtgctttttatgaaaacatggttaaagttgccagatgtgtgacatataataaggtt
gttggaatatttggattcaccccagaggatcatataggaaaagtcagctttcctcctgtg
caagcggttccatcattcccttcttcatttccacatctcttctctgggaatgaccaacta
cggtgcttaatcccatgtgcaatagaccaggatccttatttcaggatgacccgggacgtt
gctccaagaattggttaccagaaaccatcattaattgaatcgagatttttccctgctctt
cagggggagaacacaaaaatgtcggccagtgatccaaattctgcaatatatgtgacagat
agtgctaaagaaataaagacaaaggtgaacaaatatgcgttctcaggtggccgggactca
attgagctccatagaaaacttggagctaaccttgatgtggatgttccaatcaagtacctg
aacttcttccttgaagatgacaatgagctcgagcacataaagaaggagtacaaggaagga
aggatgctgacgggtgaagtgaagcagcgccttgttgcagttctatccgaactggttgcg
agacatcaaagagctagagcactagtgaccgaggagatggtcgatgtatttatggcggcg
agacctcttcccaatatgtttggctga

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical substance (6)   
   KEGG COMPOUND (6)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   OC (1)   
   RAP-DB (1)   
Protein domain (1)   
   Pfam (1)   
All databases (18)   

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