KEGG   Dendroctonus ponderosae (mountain pine beetle): 109538448
Entry
109538448         CDS       T04899                                 
Name
(RefSeq) 3'-5' RNA helicase YTHDC2 isoform X1
  KO
K20099  ATP-dependent RNA helicase YTHDC2 [EC:3.6.4.13]
Organism
dpa  Dendroctonus ponderosae (mountain pine beetle)
Brite
KEGG Orthology (KO) [BR:dpa00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:dpa03041]
    109538448
Spliceosome [BR:dpa03041]
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   RNA helicase-like proteins
    109538448
SSDB
Motif
Pfam: YTH Helicase_C HA2_C OB_NTP_bind DEAD R3H Ank_2 HA2_N Ank Ank_5 YfbR-like Ank_3 nSTAND3 ATPase
Other DBs
NCBI-GeneID: 109538448
NCBI-ProteinID: XP_019761247
EnsemblRapid: LOC109538448
Position
Unknown
AA seq 1514 aa
MSARRNVGASWRNSGAPKLQKQRKEHVRFGVNKGSASRNKLVIDEHIQEATPECLRIEID
KIFNEFLADPDKTEYIFPSEYNNLQRKYVHYKAQIMNLVSRSHGKEPNRQLHLLKKPKQL
ASQSVQVQICNEVYEELQEFDKKFSKIQTEPQTYRAIKRFEKVYGKIQDGEPVVPQRANN
VHQGIETVRHSLPIFEKRNLVMDCINLNQVTIISSETGSGKTTQIPQYILEDAVSNNQPC
KIICTQPRRISTIAAADRVAYERGETVGGSVGYHIRLESKCGYNTNLLFCTIGVFLRNLM
CGNKCLKNLTHVIVDEIHERDKLSDFLLICLKQNLNQFPHLKVILMSATVNTVKFQEYFN
SSAVLSIAGRLHDIQTYFLEDILSMTKYFTPQMRSAMVKLANKKSNSHSFTQQKNVRFSE
QDQTNFNLTLDAYRNFSDDYNYTVHYDEATADLLQLFISEDVPVDQQHSLKGWTALMIAC
QLGDVEFVSKLCTLGASTDIADAMGRTAFDYAKDLNKNGVLQLLTTRQADKKTNECNTDD
LQFLRQLYDMTTPDDFIDYELIVALIKYIHANSDTGSILVFLPGYDEIMQCNDCVMDSEL
AGIYRIFFLHSSMNMKDQCDIFKSLPNQRKLILSTNIAETSITVEDVVFVIDVGKAKEKV
YDSYNKLSTLQTQWISRACAKQRQGRAGRVRTGFCFRLYSNQRFSHMPEERVPEILRVSL
EELCLNAKIIAPKSMNIYNFLCLAPDPPSVNSVGVAVEHLQSLGALDKEEDLTRLGEYLA
QLTLEPRLGKMLIFGCIFKCLEPMLTLCAVMAHKDPFQLPPQANLKTVAAAKRRELIDGV
PSDHSVYLLVFHKWQSEVSRGRSKQFCSEYFISESTMYSVLETRRQLLGQLRAVGFVNDT
HSIDNFNVNSNSWGLVKAIMSAAFFPNVAYPIQKGCSLATRNEKKVFIHNTSVCASKTYC
DWFFFNEMVKNRINFMVRGVTACTSFMVAVMCGVSSIYPSSHSVNIDDWLEFYFGDNIII
KFRQALHSFIEKSILNPRHSYEKDNLISGTLRRIMDMDEVNAQFVQPKNVGQRPRFLYKV
VHEASGPNRNVTFNRSDMRQRSAPDNFQRQDLNAKSIEDHKKGRTPKRYIPPHKKDVAVP
KSAAQHLNFDSFGSSTSVSNIIPSMQILSLKSGTSNSAASLLNGLGPVAAIDRENSPSAS
NYQNGNGFSKYNYGGYQRRNHQSGYANLDSFNGSFNPDRNGYNQYSSGYGEQQTNSRDFE
LNGFNDAHCFTPRPDLAGRKIVKQQKLGDFECRDAFSLPSAETALEPDLLPFPNFAGPNE
QQLQPMNWNSNGYLELQLPPMNDAFQSTNSHFNATPGHNRLSANAMPFAMLPKKSIDYPD
NPIFILIKANEKRNVDIAQSCKKWVLAPQTEKQVVKFASKEKIVYFVFFVKELQVIMGIA
EFTNLYIGTSKPTAILAWKYMSPLPRHKIKHLVNPYNFDKPICDGLDGMVIRQDVGEELM
RIYAEFEKLMFKNR
NT seq 4545 nt   +upstreamnt  +downstreamnt
atgagtgctaggagaaatgtaggagccagttggcggaattctggggccccaaagctgcaa
aaacaaagaaaggaacatgtcagatttggtgtgaacaagggtagtgcaagcaggaataaa
ctggtaattgatgaacatatccaagaagccactccagaatgtttaagaattgagattgat
aagatattcaacgagttcttggcagatcctgataagactgaatacatttttccgtctgaa
tataataatttgcaaagaaaatatgtgcattataaggcccagataatgaatctggtctca
agatctcatggcaaagagcccaataggcagctgcatttgctcaaaaaaccgaaacagtta
gcgagccagtcagttcaggtgcaaatctgtaatgaagtctatgaagaactgcaggagttc
gataagaagtttagtaaaattcaaacagagcctcagacttacagggcaattaaacgattt
gaaaaagtgtatggtaaaatacaggacggcgaacctgtggttccacagagagctaataat
gtgcatcagggtattgagactgttcggcatagtcttccgatctttgagaaacgaaacctt
gtaatggattgcattaatttgaatcaggtcacaattatttcctctgaaactggttctgga
aaaacaactcaaatccctcaatacattttggaggacgctgtatctaataaccaaccttgt
aagataatatgcactcagcctcgcagaatttcaactattgctgccgctgatagggttgct
tatgaaagaggcgaaacagttggaggcagtgttggctatcatattaggctcgaatcgaaa
tgcggatacaataccaacctgttattttgcaccattggtgtgttcttgagaaacttaatg
tgtggcaacaagtgcttgaaaaacctaactcatgtgatagtagatgaaattcacgaaaga
gataaattgagcgatttcttgctaatttgccttaaacaaaatttgaaccagtttccccat
ttaaaggtcattcttatgtcagccacagtgaacaccgttaaatttcaagaatactttaat
tcaagcgctgtactttcaattgctggtcgtttgcacgatattcaaacatattttctagaa
gatatcttaagtatgaccaagtattttacacctcagatgcgtagtgcgatggtcaaatta
gcaaacaagaaatcgaactcacacagttttacacaacagaaaaacgtacgattttcagaa
caagatcagaccaactttaacttgaccttagatgcttataggaatttcagtgacgactat
aattacaccgtgcattatgatgaagctactgctgatctccttcaattatttatttctgaa
gacgttcctgttgatcagcagcactctttaaaaggttggaccgctttaatgattgcgtgt
cagttaggagatgtggagtttgtcagtaaattgtgtacattaggtgcaagtaccgatatt
gcagatgccatgggaagaactgcgtttgattatgcaaaagatttaaataaaaatggcgtt
ttgcaattgttgaccacaaggcaggccgataagaaaactaatgagtgtaacactgatgac
ttgcaatttttgaggcagctctatgatatgactactcctgatgatttcattgattatgag
cttatcgttgctctaatcaagtatatacatgctaactccgacacaggatctatactggtt
tttttgcctgggtatgacgaaataatgcagtgtaacgattgcgttatggattctgagctt
gccgggatatacaggatttttttcctacacagcagcatgaacatgaaggatcaatgtgat
attttcaagtccctgccaaatcagagaaagttgatattaagcacgaacatcgccgaaacc
agtataacagttgaagacgtcgtctttgttattgatgttggtaaagccaaagaaaaagtt
tatgattcgtataataaactgtccactctacaaactcaatggatttcacgtgcttgtgcc
aaacagcgccaaggacgagcgggaagagtaagaactggattctgttttagactatattca
aatcaacgctttagtcacatgccagaagaaagagttcccgagattttaagggtgtcgtta
gaagagctgtgtctaaatgccaagattattgcaccgaagtccatgaacatatacaacttt
ctctgtttagccccagatccaccttcagttaactcagtcggtgtcgctgttgaacacttg
caatccctaggagctctagacaaagaggaagatcttacaagattgggagaatatttagct
cagcttacactcgaaccgaggctcggaaaaatgctgatatttggttgcatttttaaatgt
ttggagccgatgctgacactatgtgccgttatggcacacaaagacccatttcaactaccc
ccacaggcaaacttgaaaactgttgccgctgcgaaacgacgtgagcttatagatggtgtt
ccaagtgatcattcagtctatttattggtctttcacaaatggcagagcgaagtcagcaga
ggtcgttcgaaacaattctgttctgaatattttatttccgaatcaactatgtattctgta
ctggagaccagacgacaactactaggccaactgagagccgttggttttgttaatgacact
cactcaatagataattttaatgtgaacagcaattcatggggtttagtcaaagccatcatg
agtgccgcattttttcccaacgttgcttatccaatacagaaaggatgcagtttggccacc
agaaatgagaaaaaagtgttcatacataatacaagtgtttgcgcttcaaaaacatattgc
gattggttcttttttaatgaaatggttaaaaatcgaattaattttatggttcgcggtgtc
acagcatgcacttcattcatggttgctgtaatgtgtggagttagttccatttacccatcg
tcccactcagttaatatagatgattggctggagttttatttcggcgataatataattatc
aaatttcggcaagccttacattcgtttatagaaaaatccatcttgaatccaaggcattcc
tacgagaaagacaatttaatttctggaactttgcgaagaataatggacatggacgaagtt
aatgcacaatttgtacagcccaaaaatgtgggacagagacccaggtttttatataaagta
gtacatgaagccagtggcccaaatagaaatgtaacattcaatcgcagcgatatgaggcag
cgttcagcacccgataattttcaacggcaggatctaaacgctaaatccatcgaggaccat
aaaaaaggtcgtactccgaagcgttacattccacctcataagaaagatgtggcagtacca
aaatcagctgctcaacatttgaactttgattcttttggctcaagcactagtgtctctaat
ataataccgagtatgcaaattcttagcctgaaatctggtacatccaattcagcagcttct
ttattgaatggcttaggaccagtagctgctatagatcgagaaaatagtcccagtgcttct
aactatcaaaatggcaacggattttctaaatacaattacggtggttatcagaggcgtaac
caccagtcaggatatgcgaatttggacagttttaatggatctttcaatccggatagaaat
ggatataatcaatatagttctggatatggagaacaacaaacgaacagtagagacttcgag
ctaaatggctttaacgatgcacactgtttcactcctcggccagatttagcaggtcgcaaa
attgttaaacagcagaaattgggagattttgaatgcagagacgcattttcactgcctagt
gcagaaacggcattggaacccgatcttctcccatttccgaattttgcaggccctaatgag
cagcagcttcaaccaatgaattggaactcaaatgggtatcttgaacttcaattaccgcca
atgaatgatgcattccaaagcaccaattctcatttcaacgccactcctggtcacaatagg
ttatcggcgaacgcaatgccttttgccatgcttccaaaaaaatctatcgattatcccgat
aatcctatttttatcttaataaaagcaaacgagaaacgaaacgttgatattgctcaaagt
tgcaagaaatgggttctggctccccaaacggagaagcaagtagtaaagtttgcaagcaaa
gaaaagatcgtgtacttcgtattcttcgttaaagagcttcaggtgattatggggatcgca
gaatttacaaatctctacatagggacgtctaaaccaaccgccatccttgcctggaagtat
atgtctcctctgccgagacataaaatcaagcatctggtaaatccatataacttcgataag
ccaatttgtgatggtcttgatggaatggtcattcgacaagatgttggcgaagaactcatg
aggatttatgctgagtttgaaaaactgatgtttaaaaatcggtaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (37)   
   KEGG ORTHOLOGY (1)   
   RefGene (32)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   ENSEMBLRAPID (1)   
   OC (1)   
Protein sequence (4)   
   RefSeq(pep) (4)   
DNA sequence (4)   
   RefSeq(nuc) (4)   
Protein domain (14)   
   Pfam (14)   
All databases (63)   

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