KEGG   Candidatus Babela massiliensis: BABL1_gene_990
Entry
BABL1_gene_990    CDS       T02948                                 
Symbol
gyrB
Name
(GenBank) Type IIA topoisomerase (DNA gyrase/topo II topoisomerase IV) B subunit
  KO
K02470  DNA gyrase subunit B [EC:5.6.2.2]
Organism
dpb  Candidatus Babela massiliensis
Brite
KEGG Orthology (KO) [BR:dpb00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:dpb03032]
    BABL1_gene_990 (gyrB)
   03400 DNA repair and recombination proteins [BR:dpb03400]
    BABL1_gene_990 (gyrB)
Enzymes [BR:dpb01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.2  DNA topoisomerase (ATP-hydrolysing)
     BABL1_gene_990 (gyrB)
DNA replication proteins [BR:dpb03032]
 Prokaryotic type
  DNA Topoisomerases
   BABL1_gene_990 (gyrB)
DNA repair and recombination proteins [BR:dpb03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHIIR (short-homology-independent illegitimate recombination)
     Facilitator
      BABL1_gene_990 (gyrB)
SSDB
Motif
Pfam: DNA_gyraseB DNA_gyraseB_C Toprim HATPase_c HATPase_c_3 GyrB_hook
Other DBs
NCBI-ProteinID: CDK30296
UniProt: V6DIE1
Position
complement(199057..201459)
AA seq 800 aa
MSDNKKEYGAQSIRVIEGLEAVRKRPAMYIGSTGVNGLHHLVYEIVDNSVDEALAGYCDK
IEVILHTDGSCSVEDNGRGIPTGIHPTENISAAEVALTKLHAGGKFDKDVYKYSGGLHGV
GVSVVNALSQSLELIIYQNNKVHVQSYQQGKPLDILKVTQETKKRGTYIRFLPDPEIFRE
TTIFSFDVLSSRFRELAFLNKGLKIFIKDERSGKSHEFYFEGGIISFVEHINSKKTPLFS
NVIYNFKEDEQSYIEIALQYNDSYTEQLFSFVNNINTIEGGTHVAGFKAALTKVCNKRGQ
EFNILKDSESFSSEDVREGLVGVINLKIAEPQFEGQTKAKLGNGEVKGLIESWVGNILDT
FFEENPAVARKILQKAYLAMQSREAARKAREITRRKTVLESVVLPGKLADCSSENPSESE
LFIVEGDSAGGSAKSARDRFTQAILPLKGKILNVEKARFDKILSNEEIRSLISAIGTGIG
ETDFNLSKARYHKIILMTDADVDGSHIRTLLLTFFFRYMKDLIENGYLYIAKPPLYKAKI
GKKEQYLLDEKSFKKFLIDWIKENGDLIINGQKLSILDYNLVFDNLLRYYDQLQDLARTF
KLHYVHLNQIIEFLFKNPLINQELDQNLDNQDNMDVVVNKLRNYFKGYSITLDKKEDNYI
LSFKQLNNDWSVDFDLFNSPEAYKLVEMYNTLDNLNSNWTLKISDRERSISDKGILNLMS
AIVKISKPYMSIQRYKGLGEMNPQQLWETAMDPKARTLIQVKIGDVLEADSWFDTLMGSD
VGGRREFIEEYGIFAKNLDI
NT seq 2403 nt   +upstreamnt  +downstreamnt
atgtcagataataagaaagaatatggtgcccagtctattcgtgttatagaaggacttgag
gcagtaagaaagagacctgcgatgtatattggctctacaggagttaatggattacatcat
ttggtttatgaaatagtagataactctgttgatgaggctttggccggatattgtgataag
attgaggtaatattacataccgatggctcatgttctgttgaagataatggtcgtggtatt
cccactggtatacatccaactgagaatatatcagcagctgaggttgctttaactaaatta
catgctggtggtaaatttgacaaagatgtatataagtattctggagggcttcatggtgtt
ggggtctcagttgtaaatgctttatctcaatctcttgaattaattatatatcaaaataat
aaagttcatgttcaatcatatcaacaaggtaaaccccttgatatcttaaaagtgacgcaa
gagactaaaaagcgtggtacttatattagatttttaccagatccagagatatttcgcgaa
acaacaatttttagttttgatgtactatcttcaagatttagagaacttgccttcttaaat
aaaggcttaaagatctttattaaagatgaaagaagtggtaaaagccatgaattttatttt
gaaggtgggattatatcttttgttgagcatataaattctaaaaaaactccactatttagt
aatgttatttataattttaaagaagatgagcaatcttatatagaaattgccttacaatat
aacgatagttatactgaacaactattttcttttgttaataatataaatactatagaggga
ggtactcatgttgctggttttaaagcagcattgactaaagtatgtaataaacgtggtcaa
gagtttaatattctaaaagatagcgaaagcttttcaagtgaagatgtcagagaaggtctt
gttggcgtaataaatttaaagatcgcagaacctcaatttgaaggacagactaaggctaaa
ttaggaaatggtgaagttaaagggcttattgaatcgtgggttggcaatattcttgatact
ttctttgaagaaaatcctgcagttgctcgaaagatattacaaaaagcttatttggctatg
caatcaagggaagctgctcgtaaagcaagagaaataacaagacgtaaaaccgttcttgaa
tctgttgtgcttccaggaaaacttgctgattgttcaagtgaaaatccttctgagagtgaa
cttttcatagttgagggtgattctgcaggtggatcagctaaatctgcaagagatagattt
acgcaagctattttgcctttaaagggtaagattttaaacgttgaaaaagctagatttgat
aagattttatcaaatgaagagattagatctttaatttctgctattgggactggaattggt
gaaacagattttaatttatcaaaagctagatatcataaaattatattgatgaccgatgct
gatgttgatggatctcatataagaactttactattaactttcttctttagatatatgaaa
gatcttatagaaaatggttatctttatatagcaaaaccacctctttataaagcaaagata
ggtaaaaaagagcaatacttacttgatgaaaagtcttttaagaagttcttaatcgattgg
ataaaagaaaacggtgatttaattataaatggtcaaaaattaagcattttagattataat
ttagtttttgataatttattaagatactatgatcaattgcaggaccttgctcgtacattt
aaattgcactatgtacatttgaatcagattatagagtttttatttaaaaatccattaatt
aatcaagaactcgatcaaaatttagataatcaagataatatggatgtagtggttaataag
cttagaaattactttaaaggatattcaattactttagataaaaaagaagataattatata
ttgagttttaaacaacttaataatgattggtcagttgattttgatttatttaattcccct
gaagcttataagctagtagagatgtataatactcttgataatctaaatagtaattggact
ttaaaaataagtgatagagaacgttcaatatctgataaaggtatattaaacttaatgtct
gctattgttaagataagtaaaccttatatgtctattcaacgatataaaggtcttggagaa
atgaatcctcaacaactttgggaaacagcgatggatccaaaagcaagaactctaattcaa
gtaaaaataggagatgttctagaagctgattcctggtttgatactttaatgggtagtgat
gttggtggcagaagagaatttatagaagagtatggtatatttgccaagaacttagatatt
taa

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Ontology (4)   
   KEGG BRITE (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (39)   
   KEGG ORTHOLOGY (1)   
   RefGene (36)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (52)   

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