KEGG   Deinococcus peraridilitoris: Deipe_2643
Entry
Deipe_2643        CDS       T02381                                 
Name
(GenBank) DNA/RNA helicase, superfamily II
  KO
K11927  ATP-dependent RNA helicase RhlE [EC:3.6.4.13]
Organism
dpd  Deinococcus peraridilitoris
Pathway
dpd03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:dpd00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Deipe_2643
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:dpd03019]
    Deipe_2643
Messenger RNA biogenesis [BR:dpd03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     Deipe_2643
SSDB
Motif
Pfam: DEAD Helicase_C ResIII AAA_19 AAA_22 Flavi_DEAD HEM4
Other DBs
NCBI-ProteinID: AFZ68108
UniProt: L0A2L4
Position
2642195..2643628
AA seq 477 aa
MTTTFADAFSALDLHASLQRAVGELGYAKPTPIQALALPPALQGRDVLGAAQTGSGKTAA
FLLPILQRLQGLPRGKTRALVLAPTRELAAQIEESALALAKFTDVRVASVFGGVSMKPQE
KAFRGGTDLIIATPGRLLDHFQHPYARLEALEVLVLDEADRMLDMGFLPDIRRVLRHLPA
RRQTLFFSATMPAPILQLSRELLRDPVMVGAERKAAPAQGVTQSIYPVPEELKTDLLLEL
LRQPSMESAIVFTRTKHRANRLAEKLIKAGVKAERIHGNRSQAARTEALAGFKSGKYRVL
VATDIAARGIDVEALGHVVNFDVPEIPEDYIHRVGRTARAEMTGEALTFVAPQEEGDLKA
IERAVGRKLDRVTLPDFDYRARPSERFEVPIGERIAEIRARKSEERARAKAKAERKAAQD
PQPGGRGPAGSGAGRAATPSRSSASGPASAAQPAREGGRTGPSRPSRGRGRGGSRSS
NT seq 1434 nt   +upstreamnt  +downstreamnt
atgaccactacttttgcagacgcgttcagcgcgctcgacttacatgccagcctgcagcgc
gcggttggcgaacttggatacgccaagcccacacccattcaggcgctggccctgccgccg
gccttgcagggccgtgacgtgctgggtgccgcgcagacgggcagcggcaaaacggccgcg
ttcctgctgccgattctacagcgcctgcagggcctgccgcgcggcaaaacgcgcgcgctg
gtcctggcgcccacccgggagctcgccgcgcagatcgaagaaagcgccctggcactcgca
aaattcacggatgtgcgcgtagcgagcgtcttcggcggtgtcagcatgaagcctcaggaa
aaggcgtttcgtggtggcaccgacctgatcatcgcgacgcccgggcgcctgctcgaccat
ttccagcacccttacgcccgcctggaggcgttggaagtgctggtgctcgacgaggccgac
cggatgctcgacatgggctttctgcccgacatccgccgggtgctgcgtcacctgccggcg
cggcggcagacactcttcttctcggcgaccatgcctgccccgattctgcagctgagccgt
gaactgctgcgtgacccggtgatggtgggagccgagcgcaaggcggcccccgctcaggga
gtcacccagtcaatctatccggtgcccgaagagctcaagaccgacctgctgctggagctt
ttgcgccagcccagcatggaaagcgcgattgtcttcacccgcaccaaacaccgcgccaac
cgcctcgccgaaaaactgatcaaggccggggtcaaagccgagcgtattcacggcaaccgt
tcccaggcagcgcgcaccgaggcgctggcgggcttcaagtccggcaagtaccgggtgctg
gtcgccactgacatcgccgcgcgaggcatcgacgtcgaagcgctcgggcacgtggtgaat
ttcgacgtgccggaaatccccgaggactatatccaccgggtgggccgcactgcgcgcgcc
gagatgaccggtgaggccctgacgtttgtagcgccccaggaagagggcgacctcaaggcc
atcgagcgtgcagtgggtcgcaagctcgaccgggtgactctgccggatttcgattaccgc
gcgcggcccagcgagcggttcgaggtgcccatcggtgagcgcattgccgaaatccgcgcc
cgcaagtccgaagagcgcgcccgcgccaaggccaaggccgaacgcaaagcggcccaggat
ccccagcccggcggacgcggcccggccggttcaggcgcgggccgtgcggcgacaccttcc
cggtcatcggcgagcggtccggcgtctgctgcccaaccggcccgcgaaggcggccggacg
ggcccttcgcgtccctcgcggggtcgtggccggggtggttcacgctccagctga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (16)   

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