KEGG   Pseudodesulfovibrio piezophilus: BN4_10249
Entry
BN4_10249         CDS       T02481                                 
Symbol
recD
Name
(GenBank) Helicase, RecD/TraA family
  KO
K03581  exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
Organism
dpi  Pseudodesulfovibrio piezophilus
Pathway
dpi03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:dpi00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    BN4_10249 (recD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:dpi03400]
    BN4_10249 (recD)
Enzymes [BR:dpi01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.11  Exodeoxyribonucleases producing 5'-phosphomonoesters
    3.1.11.5  exodeoxyribonuclease V
     BN4_10249 (recD)
DNA repair and recombination proteins [BR:dpi03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecBC pathway proteins
     BN4_10249 (recD)
SSDB
Motif
Pfam: AAA_19 AAA_30 HHH_4 SH3_13 UvrD_C_2 HHH_5 Viral_helicase1 AAA_11 PIF1 SLFN-g3_helicase nSTAND3 AAA_22 AAA_23 UvrD-helicase HHH_2 NTPase_1 PhoH AAA_28 Helicase_RecD AAA T2SSE AAA_18 MeaB AAA_16 AAA_24 AAA_29 NACHT 5_3_exonuc Myosin_head RNA_pol_A_CTD
Other DBs
NCBI-ProteinID: CCH47489
UniProt: M1WNC6
Position
249667..251874
AA seq 735 aa
MNDDRTRVTGAEVQSVVYYNKDNGYTIARVRLKDEPGLLSIVGTMGELTAGSTLDLDGVW
TVHPKFGRQLEVRTFEESRPATENGVIRFLQSSIKGVGEKTATIMVEEFGVEVLDLLDDN
PERLLKIKGISKKKLKDIIESWGKQREIKNLLVFLQTHKVPTTFAGKIFHLYGAQAEKKL
RDNPYDLAYEIRGVGFRTADQMAMKLGFEPDCAQRLEAAIVYHMFSSCERGGHMFILKDK
LLADVARMLDAGDYNKLELALYALEEKKRIRIEDLLEQNLSDAVYLMHYYHHENEITQRL
FQLVSHPTPVSRKKIDKTLPRVEGKLGFTLSDEQREAVFDACSNKVFIITGGPGTGKTTI
TKAIMLTLKELGLKIKQAAPTGRAAKRMSEATGHPAQTVHRLLQYQPSGGFHYCEDQKLK
ADVLVIDEASMLDAHLFVSILRSLPHTCRLILVGDVNQLPSVGPGNVLGDLINSNRIPCS
VLTHIFRQAQESFIVLNAHRINNGQFPRQHPSQAPDADFFWIPQENTVKVQKLLLDSVCD
RIPQRYGFDPLRDIQVLTPMHKGDVGTQALNSALQERLNPSSSNKPELKRKFATYRQGDR
VIQLKNNYDKEVFNGDLGWIIDVDPDDHELFIEFDGNQVVMESSELDELGLAYAVSVHKS
QGSEYPAVVMPIVTQHFMLLQRNLLYTGLTRARELAVLIGSERAFQIGLNNATAGKRSTH
LAYRLQTMFSQNRLV
NT seq 2208 nt   +upstreamnt  +downstreamnt
atgaatgatgatcgaacccgggtgactggtgcagaagtacaatccgttgtctattacaac
aaagataacggatatacgatagcgcgtgtgcggttgaaggatgaacccggacttctctct
attgtcggaacgatgggggaattgacagcgggatcgactttggacttggacggagtctgg
actgttcatccaaaatttggacggcagttagaagttcggacttttgaagaatcacgccct
gccactgaaaatggtgtcattcgttttctccagtcgtcaatcaaaggcgtcggagaaaaa
acggcaactatcatggttgaagagtttggtgtcgaggtccttgatctgttggatgacaac
cccgaacgtcttttgaaaatcaaaggcatatcaaaaaagaaacttaaagatattattgaa
tcctgggggaagcagagggagataaaaaatcttttggtctttttgcagacccacaaggtc
ccaacaacgtttgccggcaaaatatttcatctctatggcgcgcaggctgagaagaagttg
agagataatccatatgatcttgcctatgaaatccgtggggtgggctttcggacagcagat
cagatggcaatgaaactgggatttgaacccgattgtgcccaacggctcgaagcggcgata
gtttatcatatgttttcctcatgtgaacggggaggacacatgtttattctcaaggataaa
cttcttgctgatgtcgccaggatgcttgatgccggggattataacaaactggaacttgct
ctctacgcccttgaagaaaagaaacgcattcgcatcgaagacctgctcgaacagaacctc
tcagatgctgtttatctgatgcattactatcatcatgaaaatgagattacccagcgcctg
tttcagttggtgagtcatcctaccccggtcagtcgaaagaaaattgataaaactctcccc
agagttgaaggaaagctgggatttactctttccgacgaacagcgagaggctgtttttgat
gcgtgtagtaataaggtttttatcataacaggtggacctggtactggtaagacgacgatt
accaaagcaatcatgctcactctcaaagagttggggctcaagatcaaacaggcagctccc
acagggcgcgctgccaaacgaatgtctgaagccacagggcatcctgcacaaacagttcat
aggctgttgcagtatcaacccagtggtggttttcattattgcgaggaccaaaaactgaaa
gcagatgtacttgtcattgatgaagcaagtatgttggatgctcatcttttcgtttccatt
cttcgctctcttcctcatacgtgtcgcctcattctggtcggcgatgttaaccagttgccg
agtgtcggaccgggaaatgttctaggcgatctgatcaattccaaccgtataccatgctct
gttttgactcatatatttcggcaggcacaagaaagttttatcgtcctcaatgcgcatagg
atcaataatggccaattcccgaggcagcacccgagtcaggctcctgatgcggattttttc
tggattccacaggaaaacacggtaaaggttcaaaagcttcttctggatagtgtatgcgac
aggataccacaacgttatggatttgatcctctccgggatattcaagttctgacacctatg
cataaaggtgatgtcggtacgcaggcacttaattccgctcttcaggaaaggctcaaccct
tcatcttcgaataaacctgaattaaaaagaaaatttgctacttaccggcagggagacagg
gttattcaattaaaaaacaattatgacaaggaagtctttaacggcgatcttggctggatc
attgacgttgaccctgatgaccacgagctttttatcgaatttgatggcaatcaggttgtc
atggaatccagtgaattggatgaacttggccttgcatatgctgtctctgttcacaagtct
caaggcagtgaatatccggcggttgtcatgcctatcgtgactcagcatttcatgttgctt
cagcggaatttgctctataccggcttaactcgcgcaagggaacttgccgtgctgataggg
agcgaacgcgcttttcaaattgggcttaataacgccacggctggtaaacgaagtactcat
ctcgcatatagactacagaccatgttttcacagaatcgattggtgtag

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (30)   
   Pfam (30)   
All databases (40)   

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