KEGG   Pseudodesulfovibrio piezophilus: BN4_10939
Entry
BN4_10939         CDS       T02481                                 
Name
(GenBank) DEAD/DEAH box helicase domain protein
  KO
K05592  ATP-dependent RNA helicase DeaD [EC:3.6.4.13]
Organism
dpi  Pseudodesulfovibrio piezophilus
Pathway
dpi03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:dpi00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    BN4_10939
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:dpi03019]
    BN4_10939
   03009 Ribosome biogenesis [BR:dpi03009]
    BN4_10939
Messenger RNA biogenesis [BR:dpi03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     BN4_10939
Ribosome biogenesis [BR:dpi03009]
 Prokaryotic type
  rRNA helicases
   BN4_10939
SSDB
Motif
Pfam: DEAD Helicase_C ResIII CMS1
Other DBs
NCBI-ProteinID: CCH48176
UniProt: M1WJM9
Position
complement(984215..985972)
AA seq 585 aa
MNNENTPDTVNDDAVTDSKFPDMKFEDLPSSLADACAQAGWDKLMPVQEKALPYLLNNTD
VMVQARTGSGKTGAFVLPLMEKLDPNIPQCQALVMVPTRELAQQVAQEARLLAGESGINV
VAVYGGVGYQQQLDAFREGAQLVVGTPGRILDHLVRRSLLLDSLKVLIFDEADRMLSVGF
YPDMVEVKRYLPRNIDGSFMFSATFPQSVLRLAEEFMSTPDFLSLSSDEANVSAITHQFV
EVSAMGKERKLIKLIELENPASAIIFANTKRNVEFTAELLSQFGFDAEGLTSDLTQNKRE
KLMARIKEGKLRFLVATDVAARGIDIPELSHVFMMEPPEDPESYVHRAGRTGRAGASGTA
ITLVDVIQKMELERIASRFKIKFDEVKDPTEEDVAAIIEERLTALLEKKFRKLTHLQRER
AARFLPLAKKYGEAEDTMGLIAMLLDEIYQNTLHGKPAEPELKQHVSQDAKNGSQEGGRR
AKNSGNKPSGGRGRQQREMRGEKSHGNGGQENRGRKRQDARSESKERTAADRPERPVREN
RPKRVAKDQPKEQPVRQAESSPQQTEDEGGAAKRRRRPRRRRRRS
NT seq 1758 nt   +upstreamnt  +downstreamnt
atgaacaacgaaaacacacccgacaccgtcaacgatgacgctgtcactgattcgaaattt
ccagacatgaaattcgaggatttaccatcctctctcgctgatgcctgtgcccaggctggt
tgggataagttgatgcctgtgcaggaaaaggcgctaccatatctattgaataatactgat
gtcatggtgcaggcgcgaacagggtcaggcaaaaccggcgcttttgtccttccattgatg
gagaagcttgatccgaatattccgcaatgtcaggcgcttgtcatggttccgactcgtgaa
ctcgcccagcaggttgctcaggaagcgcgtctgttggccggagagagcggtatcaatgtc
gtggctgtctatggcggtgtcggctatcagcagcagctcgatgcttttcgcgaaggtgcc
cagcttgttgtgggaacacccggtcgaattctcgatcaccttgttcgccgcagcttgctt
ctcgattctctcaaggtcctgatttttgatgaagcggaccgcatgttgtctgttggtttt
taccctgacatggttgaagtgaaacgctacctgccgcgcaatattgacgggagtttcatg
ttctcggccacctttccgcaatctgtgttgcggttggccgaagaatttatgtccacgccc
gattttttgagtctttccagtgatgaagccaatgtttcggcgattacccatcagtttgtg
gaagtttctgccatggggaaagagcggaaactcatcaagctcattgagttggagaatccg
gcctcggcaattatttttgccaatacaaagcgcaatgttgaattcacggcggaactgctt
tcgcagttcggttttgatgccgagggattgacttcggacctgacgcaaaacaagcgcgaa
aagctcatggcccgtatcaaggaaggcaagctgcgctttttggttgcaacagatgtggcg
gcgcgaggtattgatatccccgaattgtcacacgtttttatgatggaaccgcctgaagac
ccggaaagttatgttcacagggccggacgtactgggcgagcaggtgcatccgggacagca
attacactggttgacgtcattcagaaaatggaactggaacgcattgccagtcgtttcaaa
attaaatttgatgaggtcaaagatcccacagaagaggatgttgcagccatcatcgaagag
cgattgactgccttgttggaaaagaaattccgtaagctgacccatttgcagagagagcgg
gctgctcgttttctgcctctggcaaagaaatatggtgaggctgaagacaccatggggctg
attgcaatgctcctggacgaaatttatcagaatacactgcacggaaagcctgccgagccg
gaattgaaacagcacgtttcacaagatgcgaaaaatggctcgcaagagggcggcagaaga
gcaaaaaacagcgggaacaagccttcaggaggcagggggcgccagcaacgggaaatgcgc
ggcgagaagagtcatggtaatggagggcaggaaaatcgggggaggaaacgtcaggacgcc
cgttcggagtccaaagaacgaaccgccgcagatcgtcctgaacgaccagtgcgtgagaat
cggcccaaacgagttgccaaagatcagcctaaagaacagcctgtgagacaggctgaaagt
tctccccaacagaccgaggacgaagggggagctgccaaacgtcgccgtcgtccccgtcgc
aggaggcgtcggtcctag

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (4)   
   Pfam (4)   
All databases (14)   

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