KEGG T02481: BN4

Pseudodesulfovibrio piezophilus: BN4_12003

Entry

BN4_12003         CDS       T02481

Symbol

topA

Name

(GenBank) DNA topoisomerase 1

K03168

DNA topoisomerase I [EC:5.6.2.1]

Organism

dpi Pseudodesulfovibrio piezophilus

Brite

KEGG Orthology (KO) [BR:dpi00001]
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:dpi03032]
    BN4_12003 (topA)
   03400 DNA repair and recombination proteins [BR:dpi03400]
    BN4_12003 (topA)
Enzymes [BR:dpi01000]
5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.1  DNA topoisomerase
     BN4_12003 (topA)
DNA replication proteins [BR:dpi03032]
Prokaryotic type
  DNA Topoisomerases
   BN4_12003 (topA)
DNA repair and recombination proteins [BR:dpi03400]
Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHIIR (short-homology-independent illegitimate recombination)
     Facilitator
      BN4_12003 (topA)

SSDB

Motif

Pfam:

Topoisom_bac zf-C4_Topoisom Toprim ADK_lid Toprim_4 RNA_POL_M_15KD Lar_restr_allev

Other DBs

NCBI-ProteinID:

CCH49238

UniProt:

M1WWN6

Position

complement(2116843..2119260)

AA seq 805 aa
MSKDLIIVESPAKVKTISKFLGKDYMVDASVGHVRDLPTRDLGVDEENDFAPQYEVIKGK
EEVVKRLKAAAKKADTVYLAPDPDREGEAIAWHVAELIKPVNKKIRRIQFNEITARAVKG
ALEDAQELNENLFDSQQARRILDRLVGYKISPILWKNVKRGISAGRVQSVALKILVEREK
ERRAFRADEYWPFKVLLEGSTPPPFWLDLHKLEEKAVKPGVNHIGTQTEAESLQDALENG
EFVVDSVQEKQRKRSPLPPYITSTLQQDANRRMGYSAKRTMSIAQRLYEGVELGKRGTTA
LITYMRTDSVRIAKDAQDAARELILDKFGDDYYPPKTRHFKTKGSAQDAHEAIRPVDVSI
TPDDVKSYLPSEQHKLYRLVWQRFVASQMAVATFWDTTVLVKAPRTQWRAKGERLLFPGF
LAAMDKGSSDGDTELPKLAEGDILALNELKKEQKFTQPPPRYSEASLVKTLEELGIGRPS
TYAAIISTLLDREYARQEEKRFVPTELGFTVSNQLSEHFKALMDVGFTAQMENLLDDVAA
GKQDWVKLLNDFGGDFYPTLDKARTEMARSQQETEIVCENCGKPMAIKFGKTGEFLGCTG
FPSCRTIKNFTRDEQGAIQIVEREKPEETGVKCDKCGRPMAIKQSRRGEFLGCTGYPDCK
NIVNFERDENGKIKVIESEKPKVVGTCPECGGELLLKKARTGSRFIACSNYPDCTYAAPF
STGVPCPNEGCEGELVEKSSRRGKLFYSCSTYPKCDYAVWNWPVNEPCPKCQHPILTRKT
TKDKGEHIACPQKGCGYTREMDAEK

NT seq 2418 nt +upstreamnt +downstreamnt
atgtcaaaagatttaatcatcgttgagtcccccgccaaagtgaagaccatcagtaagttc
ctgggtaaggactatatggtcgacgcctctgtcggacatgtccgcgacctgccaacccgc
gacctcggtgtggatgaagaaaatgacttcgccccgcaatatgaggtcatcaagggcaag
gaggaggtcgtcaaacgcctgaaagccgccgccaaaaaagcggataccgtctatctcgca
cctgaccccgaccgcgagggagaggctattgcgtggcatgttgccgagcttatcaagcca
gtcaacaagaaaatccgacgtattcagttcaacgaaattactgctcgagcagtcaaggga
gctcttgaggacgcacaggaactcaatgagaacctgtttgactcccagcaggcgcgtcga
attcttgatcgcctggttggttacaagatttctccgattctctggaagaatgtcaaacgc
ggaatttccgcagggcgggttcagtccgttgccctcaagattctggtggagcgggagaag
gagcgccgcgcttttcgggccgatgaatactggccgttcaaggtgttgctggaaggttcc
actccgccaccgttctggctcgatcttcacaagctggaagagaaggccgtcaaaccgggc
gtcaatcacatcggtacccagaccgaggccgaatctcttcaggatgctttggagaatgga
gaattcgtggtggattccgtgcaggagaagcagcgcaaacgttcgcctctgccgccatat
attacctcgaccctgcaacaggacgccaacaggcgtatgggctattctgccaagcggacc
atgtccattgcccagcgtctctatgaaggtgtggagcttggcaagcgtggaaccacggct
ctcatcacctacatgcgtaccgattcggtgcgcattgccaaggacgcgcaggatgcggcc
agggaattgattctcgacaagttcggtgacgattattatccgcccaaaacacggcacttc
aagaccaaggggagcgcccaggacgcgcatgaagcgatccgtcccgttgatgtctccatc
acgcctgatgacgtcaaatcctatcttccgtccgaacagcacaagctttaccgattggtc
tggcagcgctttgtagcttcacagatggctgttgccacgttctgggataccaccgttctg
gtcaaggctccgcgcacccagtggcgggccaagggagaacgtctgctctttcccggtttc
ctggctgccatggacaagggaagcagtgatggtgataccgaactacccaagctggctgaa
ggcgatatcctcgccctcaatgagttgaaaaaggaacaaaagttcactcagccgccgcca
cggtattcggaagcatcgctcgtcaagacgctggaggaactcggtatcggccgtccttcg
acgtatgccgcaattatttccacactgctcgaccgggaatatgcccgtcaggaagaaaag
cgttttgttcctaccgaactgggttttaccgtctccaaccagctttccgagcatttcaag
gctcttatggatgtcgggttcaccgcacagatggaaaatctgcttgatgatgtggccgca
ggcaagcaggactgggttaaattgctcaatgactttgggggagatttctatccgaccctc
gacaaggcccggacggaaatggcccgttctcagcaggaaaccgaaattgtctgtgagaat
tgtggaaaacccatggccatcaagtttgggaaaactggggaattcctggggtgtacaggc
tttccatcctgtcggacaatcaagaatttcacccgtgacgagcagggggctatccagata
gtggagcgtgagaagccggaagaaaccggcgttaaatgcgacaaatgcggacgtcccatg
gccatcaagcagtccaggcggggtgaattcctcggctgcacgggctacccggattgcaag
aatatcgtcaattttgagcgggatgaaaacggcaaaatcaaggtcattgagagcgaaaaa
cccaaggttgtcggcacctgtccggaatgcgggggggaattgcttctcaagaaggcccgg
acaggctcccgttttatcgcctgttccaactatcctgactgcacctatgccgcgcctttt
tcgacaggggttccctgccccaatgaggggtgtgaaggggagttggttgaaaagtcatcg
cgccggggcaagctcttttattcctgctccacctatcccaagtgcgattatgccgtctgg
aattggcctgtcaatgagccatgtcccaagtgccagcatcctattctgacccgaaagacc
accaaggacaaaggggaacatatcgcatgcccccaaaaagggtgcggatatacaagggaa
atggacgcagagaaataa

All links

Ontology (4)   
   KEGG BRITE (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (17)   

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