KEGG   Danaus plexippus (monarch butterfly): KGM_210043A
Entry
KGM_210043A       CDS       T04344                                 
Name
(GenBank) 5'-3' exoribonuclease 1 isoform 1
  KO
K12618  5'-3' exoribonuclease 1 [EC:3.1.13.-]
Organism
dpl  Danaus plexippus (monarch butterfly)
Pathway
dpl03008  Ribosome biogenesis in eukaryotes
dpl03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:dpl00001]
 09120 Genetic Information Processing
  09122 Translation
   03008 Ribosome biogenesis in eukaryotes
    KGM_210043A
  09123 Folding, sorting and degradation
   03018 RNA degradation
    KGM_210043A
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:dpl03019]
    KGM_210043A
   03009 Ribosome biogenesis [BR:dpl03009]
    KGM_210043A
   03016 Transfer RNA biogenesis [BR:dpl03016]
    KGM_210043A
   03036 Chromosome and associated proteins [BR:dpl03036]
    KGM_210043A
Messenger RNA biogenesis [BR:dpl03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     KGM_210043A
  mRNA degradation factors
   5'-3' decay
    5' exonucleases
     KGM_210043A
Ribosome biogenesis [BR:dpl03009]
 Eukaryotic type
  Pre-60S particles
   RNases
    KGM_210043A
Transfer RNA biogenesis [BR:dpl03016]
 Eukaryotic type
  tRNA degradation factors
   Rapid tRNA decay (RTD) pathway factors
    KGM_210043A
Chromosome and associated proteins [BR:dpl03036]
 Eukaryotic type
  Gene silencing
   piRNA pathway
    KGM_210043A
SSDB
Motif
Pfam: XRN_N XRN_M XRN1_D1
Other DBs
NCBI-ProteinID: OWR51549
UniProt: A0A212FCT2
Position
Unknown
AA seq 729 aa
MGVPKFFRYTSERYPCLNELVKQYQIPDFDNMYLDMNGIIHNCSHPDDSNPHFRITEEKI
FKDIFHYISILFQIIKPKKLFFMAIDGVAPRAKMNQQRGRRFRSAREAEKLEETAKEKGE
ALPTEKRFDSNCITPGTVFMARLHEQLKYFIKEKISTDPLWSKVKVILSGHETPGEGEHK
IMDYIRWARSQPDYDPSTRHCLYGLDADLIMLGVCTHEPHFALLREEVKFGKTTQRATSP
EETNFYLLHLSLLREYLEQEFISIKDNLPFPYDIENIIDDWVLMGFLVGNDFIPNLPNMH
ISNDALPLLYKTYMTVLPTLDGYINESGDLNLGRFEVFMQELAKIDKEKFQDTYADLKYF
EAKTGRRPNANERRDYKPNNDDTFNVNLDDIKANKPDDELQALIDATQEMFMDDMKSDED
YEETSDEEANMEMEFILHKKDYYMNKLDYSKVTDEVLSDQAECYVRAIQWNLWYYYRGCP
SWCWYYPHHYAPYISDIKDFGNMNMEFELGEPFKPFEQLLAVLPGASKHLLPTPFHDLMT
DEDSPIVHYYPVSFETDLNGKKNDWEAVVLLPFIDETNLLSAMSPCYQRLTEEELKRNSH
GPMLVYNWTADSLGPIISPEYFPSIKENHAVEKAVWRHELDVPLHLLKRGMLPDADKDVL
YPGFPTMRHLKYKTSIKKCKVKVFDQPSRNENMMLQIVPTATTDPALEELAAKILGQVVW
VGWPHLTRA
NT seq 2189 nt   +upstreamnt  +downstreamnt
atgggggtaccgaagttttttagatacaccagtgaacggtatccttgtcttaatgagtta
gttaagcagtatcagattccagattttgacaacatgtacctggatatgaatggaatcata
cacaactgttctcatcctgatgattccaatccacatttccgtatcacggaagagaaaata
ttcaaagacatattccattacatcagcattttgtttcaaattattaagcccaagaagcta
ttttttatggctatcgatggtgtagccccaagagctaaaatgaatcagcagaggggaagg
aggttccgatcagcaagggaagctgaaaagttagaggaaactgctaaagaaaagggtgag
gctctaccgacggaaaagaggtttgatagcaactgtatcactcccggaacagtgttcatg
gctcgtcttcatgaacagctcaaatattttatcaaagagaagatatcaacggaccctctt
tggtccaaagttaaagttattctgtccggacatgagacgcccggtgaaggagaacacaaa
ataatggattacattcgctgggctcgctcgcagcccgactatgatcccagcaccagacac
tgcttgtatggactcgatgcagacctcattatgttaggagtttgcacacacgaaccacac
tttgccttgctgcgagaagaggttaaatttggcaaaacaactcaaagggcaaccagcccc
gaagaaactaatttctacttgctccacctatcactactaagggaatatttggagcaggaa
ttcatatccatcaaggataatctgccattcccttacgatattgaaaatattattgacgat
tgggttctcatggggttcttagtgggcaatgattttataccaaacttgcccaacatgcat
atcagcaatgacgctctgccgctcctgtacaaaacatacatgactgtcctgcctactttg
gacggctatataaatgaatcgggagatttgaatttagggaggtttgaagtattcatgcag
gagctggctaagattgataaagagaaatttcaagacacttatgccgacttgaaatacttt
gaagccaaaactggcagacggcccaacgctaacgagaggagagattacaagcccaacaat
gacgacacattcaatgtcaacttggacgatatcaaagccaacaagccagatgacgaactg
caggctcttattgatgctacacaggaaatgtttatggatgacatgaagagcgatgaagac
tatgaagaaactagtgatgaggaagcgaacatggagatggaattcattctacataagaaa
gactattacatgaacaagttggactattcaaaggttaccgacgaggtgctatcagaccaa
gccgagtgttatgtccgagccatccagtggaatctgtggtactactaccgaggctgcccc
tcctggtgttggtactaccctcaccactacgctccatacatctcggatatcaaggacttc
gggaacatgaatatggagtttgagctgggagaaccgttcaagcccttcgagcagttgttg
gcggtgttgccaggcgccagtaagcacctcctgccgactccgttccacgacctgatgacg
gacgaggactcgcccatagtccactactacccggtctccttcgagaccgacctcaacggg
aagaagaacgactgggaagctgtcgtccttctgcccttcatcgacgagacgaacctgcta
tcggccatgtctccttgctaccagcgactcactgaagaggaattgaagagaaattctcac
ggaccgatgttagtttacaactggacagctgacagtttaggaccaataatatccccggaa
tatttcccatcgataaaagaaaatcacgccgtggaaaaggctgtgtggcgacacgagctc
gacgtgccgctgcatctgttgaagcgggggatgctgcccgacgccgacaaggacgtgctg
tacccgggcttccccaccatgcgccacctgaagtacaagacgagtataaagaagtgcaag
gtgaaggttttcgaccagccgtcgcgcaatgagaatatgatgctgcaaattgtacccact
gccacaactgaccccgcgctagaggaactggccgccaagatactgggccaggtcgtgtgg
gtcggctggccgcatttaacacgggccaa

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