KEGG   Dictyostelium purpureum (cellular slime mold): DICPUDRAFT_53141
Entry
DICPUDRAFT_53141  CDS       T02090                                 
Name
(RefSeq) RNA-binding region-containing protein (RNP-1)
  KO
K13126  polyadenylate-binding protein
Organism
dpp  Dictyostelium purpureum (cellular slime mold)
Pathway
dpp03015  mRNA surveillance pathway
dpp03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:dpp00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    DICPUDRAFT_53141
  09123 Folding, sorting and degradation
   03018 RNA degradation
    DICPUDRAFT_53141
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:dpp03019]
    DICPUDRAFT_53141
   03041 Spliceosome [BR:dpp03041]
    DICPUDRAFT_53141
Messenger RNA biogenesis [BR:dpp03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    eIF4F and regulatory proteins
     DICPUDRAFT_53141
   mRNA cycle factors
    Stress granule specific factors
     DICPUDRAFT_53141
Spliceosome [BR:dpp03041]
 Complex C
  Other components
   Complex C specific factors
    DICPUDRAFT_53141
SSDB
Motif
Pfam: RRM_1 PABP RRM_5 Nup35_RRM RRM_3 RRM_7 RRM_occluded OB_RNB
Other DBs
NCBI-GeneID: 10506664
NCBI-ProteinID: XP_003284738
JGI: Dicpu1_53141
UniProt: F0ZBB9
Position
Unknown
AA seq 565 aa
MTSSFTPISSSLYVGDLLPEVSEQTLFEVFNQVGLVSNIRVCRDTNTRRSLSYAYVNYYN
AADAERALDTLNNTPIRGKPCRIMWSQRDPSLRKSGVGNVFIKNLDKGIDHKALYDTFSA
FGNILSCKVVTDDNNSSKGFGFVHYESQDSADKAIAKVNGMMINGQKVFVGPFKSSKERG
QPTEIKFTNVFFKNLAEDVTSDQLKELLAPYGTITNVAIMLDEKTGKSKGFAFANFESAD
AAKNVVEIENGKVFHGKPLYAGRAQKKIEREAELKHTFETKYQGVNLYIKNIDDSIDNDK
LREVFSQFGTITSAVVMKDDKATTSKGFGFVCYTSPDEATRAVTEMNGRMIGTKPLYVAL
AQRKDIRRAQLEMQHQQKFKAGMRQTMAPAYSGGPVFFTPAPVTPAVVYQQMMPRPRNWN
GAPVGVPGNQYGMNYVRGGGQPRPNGQRPTGPRPNGQRPDSAQPIATQQPAVDQATQQPQ
AASGASQEAAPTLSSILALPTRDQQNVALGELLYPLIHNSQPELAGKITGMLLDSLPVEE
LFALTQRSDLLNEKIKEAIDVLNAN
NT seq 1698 nt   +upstreamnt  +downstreamnt
atgacatcttcatttactccaatttcttcatccctctacgttggtgatttattaccagaa
gtttcagaacaaactttattcgaagttttcaatcaagttggtttagtttcaaacatcaga
gtttgtcgtgataccaatactcgtcgttcattatcatatgcctacgttaactactacaac
gctgctgatgccgaacgtgctttagatactttaaacaatactccaattagaggcaaacca
tgtcgtattatgtggagtcaacgtgatccatcactccgtaaatcaggtgttggtaatgtt
ttcatcaagaacctcgacaaaggcattgaccacaaagctctctatgatacattctctgct
tttggtaatatcttatcatgcaaagttgtcactgatgataacaactcaagcaaaggtttt
ggttttgttcactatgaaagccaagattcagctgataaagccattgctaaagttaatggt
atgatgatcaatggtcaaaaagtatttgttggtccattcaaatcaagcaaagaacgtggt
caaccaactgaaatcaaattcaccaatgttttcttcaagaatctcgctgaagacgtcacc
tccgatcaattaaaagaactcttagccccatacggtaccatcaccaacgttgctatcatg
ttagacgaaaagaccggtaaaagtaaaggttttgcttttgctaactttgaatcagctgat
gctgctaagaacgttgttgaaatcgaaaacggtaaagttttccacggtaaaccactctat
gctggtcgtgctcaaaagaaaatcgaacgtgaagctgaactcaaacatacctttgaaacc
aaataccaaggtgtcaacctttacatcaagaacattgatgacagcatcgataatgacaaa
ttaagagaagttttctcccaatttggtaccatcacctcagctgttgtcatgaaagacgac
aaagccaccacctcaaaaggttttggtttcgtttgttacacttcaccagatgaagctact
cgtgctgtcaccgaaatgaacggtcgtatgattggtaccaaaccattatacgtcgctctt
gcccaacgtaaagatatccgtcgtgctcaactcgaaatgcaacatcaacaaaaattcaaa
gctggtatgcgtcaaactatggctccagcttacagcggtggtccagtcttcttcacccca
gctccagtcaccccagctgttgtctaccaacaaatgatgccacgtccacgtaactggaat
ggtgccccagtcggtgtcccaggtaaccaatacggtatgaattacgtccgtggtggtggt
caaccaagaccaaacggtcaacgtccaactggtccacgtccaaacggtcaacgtccagac
tctgctcaaccaattgccacccaacaaccagctgttgatcaagctactcaacaaccacaa
gctgcctctggtgcctcacaagaagctgccccaactctttcatcaatcttagccctccca
actcgtgaccaacaaaatgttgctcttggtgaactcctctacccattaattcacaactca
caaccagaattagctggtaaaatcactggtatgttattagactcccttccagttgaagaa
ttattcgctctcacccaaagatccgatttattaaatgaaaaaattaaagaagccatcgac
gttttaaatgctaactaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   JGI (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (8)   
   Pfam (8)   
All databases (22)   

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