KEGG   Daphnia pulex (common water flea): DAPPUDRAFT_103224
Entry
DAPPUDRAFT_103224 CDS       T04347                                 
Name
(GenBank) hypothetical protein
  KO
K06176  tRNA pseudouridine13 synthase [EC:5.4.99.27]
Organism
dpx  Daphnia pulex (common water flea)
Brite
KEGG Orthology (KO) [BR:dpx00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:dpx03016]
    DAPPUDRAFT_103224
Enzymes [BR:dpx01000]
 5. Isomerases
  5.4  Intramolecular transferases
   5.4.99  Transferring other groups
    5.4.99.27  tRNA pseudouridine13 synthase
     DAPPUDRAFT_103224
Transfer RNA biogenesis [BR:dpx03016]
 Eukaryotic type
  tRNA modification factors
   Psudouridine synthases
    DAPPUDRAFT_103224
 Prokaryotic type
    DAPPUDRAFT_103224
SSDB
Motif
Pfam: TruD DUF2556
Other DBs
NCBI-ProteinID: EFX80693
JGI: Dappu1_103224
UniProt: E9GIP6
Position
Unknown
AA seq 752 aa
MSYRRKNKNKNKDKNKNKDLKKKEESQKSINRRINDIKSSLKSAITKYVSHNYAFSAIVK
QSYFDFQVHEISIDGKVVHLTEPLTQEYEEKRRYLDLVGKRLNPYKLTEFVMCKENMTMK
EALLILKISDGTPKLKMERNMTSETIDRCQDRRSITSQLVTIRNENFNVERLCRELKCQS
NIAVGNFRLVHKRVKQGHLTGNRFIMALRNVIGYKHHIVSKLESLKNVGFINYNGNKCYV
NAPMQLIGKNVLLQEWQTVFHLLSELPVSALMSDLPVEFKQFHNIPLARLVDYTLPQKVR
KDIQIFDKSLRPILVEDVRKFVLNLKSHNNHNSDITMETIPAKIRLFCIIAYQRFLWDAV
VSKRIAKFGLKPIAGDLVYVSVSDGGEDDVVQVEANHLSSNYTGDDDESSNSHQSKVIFV
SKNNLHNYSIHDIVLPLPGYNILHPVNEVAGWYKDLLLADGLSETDFERSDKDFALENLA
YNFSATYRPLILKPSDVKWRFERYNDKSRSLIPSDLDRMKNTQLLCSAVKGGRYLALILE
LSLPTSSNVSMALREITKTDMSAEFQTSLTDLLAEMPQKGAACWHKSYVKYLEKKTERDQ
KRKRSEPTSKTPMESQWKNRKLKRAMESASKGVESAEDPNTTPLEEEQQISNTNVLVAND
AEEEVELKRKTSQALCQDSASLEDAEMKQIEEEPSCSKKSAPIALDRPTIFVVEKMKIKE
EPSTSHQCQEETSNPLIKASEKQIIFVDLTSD
NT seq 2259 nt   +upstreamnt  +downstreamnt
atgtcctatcgaaggaagaataaaaataaaaataaagataaaaataaaaataaagattta
aagaaaaaagaagaatctcagaaaagtattaatcgccgcataaatgatatcaaatcttct
ttaaagagtgcgataaccaaatacgtttcccataactatgctttttcggctattgtgaaa
caaagctactttgattttcaggtacatgaaatcagcattgatggaaaagttgttcattta
actgaaccattaactcaagaatatgaagaaaaacgacgatatttagacctcgttggaaaa
cgattgaatccctacaagttaactgagtttgtcatgtgtaaagaaaacatgaccatgaaa
gaagcactactcatactcaaaattagtgatggaacaccaaagttaaaaatggaaagaaat
atgacttcggagacgatagatagatgtcaagatagaagatcaattaccagtcaactggta
acgattagaaatgaaaattttaatgtggaaaggctttgtcgtgaattgaaatgtcaatca
aatattgctgttggaaatttccgtttagtccataagcgggttaagcagggccatttgacg
ggtaatcgtttcatcatggcactaaggaatgttatcggctacaagcaccatatagtgtct
aaattagagtcgctgaaaaatgtggggttcataaattataatggaaacaagtgctatgtt
aacgcaccaatgcagttaatcgggaaaaatgtgttgctgcaggaatggcagacagttttc
catttattatcagagctccctgtttcggccttgatgtcagatctacccgtcgaatttaaa
caatttcacaatattccgctggctcgcctcgttgattacacattacctcagaaagtccgc
aaggatatacaaatattcgataagtcgttacggccgatattggtggaagatgtgcgtaaa
ttcgtgttaaatctgaaatcacataataatcataattcagacatcactatggaaacgatt
cctgctaaaatacggttattttgcataatagcctatcaaaggtttttgtgggacgctgtt
gtttccaagcgtatcgccaagtttggattgaagccaatcgcaggtgacctggtttacgtt
tcagtcagtgacggcggcgaagacgacgtcgttcaagtggaagccaaccatttatcgtct
aattacacaggagatgatgacgagtccagcaatagtcatcagtcgaaagtaattttcgtc
agtaaaaacaaccttcacaactacagtatccacgatattgtcctaccgcttcctggttac
aatatccttcatccggtcaatgaagttgccggctggtataaagaccttttactagcggat
gggctgtcggagacggatttcgaaagaagcgacaaagatttcgctcttgaaaatttggca
tataacttttcagcaacctatcggcctctgattttgaagccgtctgatgtgaaatggaga
tttgagcgttataatgataaatcacggagtcttataccctccgacttggatcgtatgaaa
aatactcagctactttgttctgcggttaaaggtggcaggtaccttgcactcatacttgag
ttaagtctaccaacatcctccaatgtcagtatggccctaagggagatcacaaagacggac
atgagtgccgaatttcaaacctccctcaccgacctgttggcagaaatgccccaaaaagga
gctgcttgctggcacaagtcatacgttaagtacttggagaagaaaacggagcgggatcaa
aaacgaaagcgttcagaaccaactagcaagactcctatggaatcccagtggaaaaacagg
aagctgaaaagagctatggaatctgcttctaaaggcgttgagtcagccgaagaccctaat
acaactccattggaggaagagcagcaaatcagtaacacaaatgtattggtagcaaacgat
gccgaagaagaagttgaattgaaacgtaaaacgagccaagcgctttgtcaagacagcgca
tccttagaagatgccgagatgaagcaaatcgaggaagaaccgagttgtagcaagaaatct
gcaccaatagccctcgacagaccgaccatatttgtggtggagaaaatgaaaataaaagaa
gagccaagcacgagccatcagtgtcaagaagaaactagcaaccccttaataaaagcatct
gagaagcaaataatattcgtcgatctcacgtctgattaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (23)   
   KEGG ORTHOLOGY (1)   
   RefGene (19)   
   NCBI-PROTEINID (1)   
   JGI (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (2)   
   Pfam (2)   
All databases (31)   

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