KEGG   Daphnia pulex (common water flea): DAPPUDRAFT_308488
Entry
DAPPUDRAFT_308488 CDS       T04347                                 
Name
(GenBank) hypothetical protein
  KO
K03013  DNA-directed RNA polymerases I, II, and III subunit RPABC1
Organism
dpx  Daphnia pulex (common water flea)
Pathway
dpx03020  RNA polymerase
dpx03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:dpx00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    DAPPUDRAFT_308488
  09124 Replication and repair
   03420 Nucleotide excision repair
    DAPPUDRAFT_308488
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:dpx03021]
    DAPPUDRAFT_308488
   03400 DNA repair and recombination proteins [BR:dpx03400]
    DAPPUDRAFT_308488
Transcription machinery [BR:dpx03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol I, II, III common subunits
     DAPPUDRAFT_308488
  RNA polymerase III system
   RNA polymerase III
     DAPPUDRAFT_308488
  RNA polymerase I system
   RNA polymerase I
     DAPPUDRAFT_308488
DNA repair and recombination proteins [BR:dpx03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      DAPPUDRAFT_308488
SSDB
Motif
Pfam: RNA_pol_Rpb5_C RNA_pol_Rpb5_N
Other DBs
NCBI-ProteinID: EFX86366
JGI: Dappu1_308488
UniProt: E9G252
Position
Unknown
AA seq 210 aa
MDDESETYRMWRVRKTIMQLCHDRGYLVTQDELDQTLEQFKIQFGDKPSERKPARSDLIV
LVAHNDDPTDQMFVFFPDEPKIGIKTIKTYCQRMQEENITRAIIVVQSGMTPSAKQSLTD
MAPKYILEYFTESELLINITEHELVPEHVVLTPEEKQELLCRYKLKENQLMRIQMGDPVA
RYFGLKRGQVVKIVRPSETAGRYISYRLVC
NT seq 633 nt   +upstreamnt  +downstreamnt
atggatgatgaatcggaaacctaccgaatgtggagagttcggaagactatcatgcagctt
tgccacgatagagggtatttagttactcaagatgagttggatcaaactttggaacaattc
aaaattcagtttggagataaaccaagtgaacggaagccagctcgcagtgatcttattgtt
ttggttgcacacaatgatgatcccacagaccaaatgtttgtttttttccctgatgagcct
aaaattggaatcaaaaccatcaaaacctactgccagcgaatgcaagaggaaaatataaca
agggccatcattgttgtacaatcaggcatgacaccatctgctaaacagtccttaacggat
atggcaccaaaatatatcttggaatatttcactgaatctgaactccttatcaacattact
gagcatgaattagtcccagaacatgttgttctcacgccagaggaaaaacaagaacttcta
tgtcgttataaacttaaagaaaatcaactgatgcgaattcaaatgggggaccccgttgcg
cggtattttggacttaaaagaggacaggttgtgaaaatcgttcgacctagtgaaactgca
gggcgctatatttcctatcgtcttgtctgttga

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