KEGG   Danio rerio (zebrafish): 100003413
Entry
100003413         CDS       T01004                                 
Symbol
kdm4aa
Name
(RefSeq) lysine-specific demethylase 4A isoform X1
  KO
K06709  [histone H3]-trimethyl-L-lysine9/36 demethylase [EC:1.14.11.66 1.14.11.69]
Organism
dre  Danio rerio (zebrafish)
Brite
KEGG Orthology (KO) [BR:dre00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:dre03036]
    100003413 (kdm4aa)
Enzymes [BR:dre01000]
 1. Oxidoreductases
  1.14  Acting on paired donors, with incorporation or reduction of molecular oxygen
   1.14.11  With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
    1.14.11.66  [histone H3]-trimethyl-L-lysine9 demethylase
     100003413 (kdm4aa)
    1.14.11.69  [histone H3]-trimethyl-L-lysine36 demethylase
     100003413 (kdm4aa)
Chromosome and associated proteins [BR:dre03036]
 Eukaryotic type
  Histone modification proteins
   Histone demethylases
    100003413 (kdm4aa)
SSDB
Motif
Pfam: JmjC zf-HC5HC2H_2 Tudor_2 PHD_2 JmjN zf-HC5HC2H Tudor_5 PHD PHD_4
Other DBs
NCBI-GeneID: 100003413
NCBI-ProteinID: XP_001921829
ZFIN: ZDB-GENE-110609-4
Ensembl: ENSDARG00000018782
UniProt: I3ITH4
Position
6:3280883..3322054
AA seq 2012 aa
MASDSVSQSSQSPATRIMTFHPTKEEFKDFNRYIAYMESQGAHRAGMAKVVPPKDWKPRR
TYDDIEDLVIPTPIQQVVTGQSGLFTQYNIQKKPMTVREFRKTANTDKFSNPRYADFEEL
ERKFWKNLTFNPPLYGADVSGTLYDPDVMEWNIGRLNTILDMVERESGITIKGVNTPYLY
FGMWKSTFAWHTEDMDLYSINYLHFGEPKSWYVVPPEHGKRLERLAKGFFPGSAQSCEAF
LRHKMTLISPSILRKYGIPFEKVTQEAGQFIVTFPYGYHAGFNHGFNCAESTNFATQRWI
DYGKLATLCSCRKDMVKISMDVFVHKFQPERYKLWKAGKDNVPIDHSKPTPEVAEIQKEN
EKGEISDSERAETLEERGEAEAGDQQKANTDDGEEDKAEAFSEKVVKRESDAGKEKAEAE
VEKSVRDEEPSSTSEQISSSSPKQNTGQKRLRSSTDNEAKDDNQVKIEVEEVEKKKAKLG
QNETDNNEEQSVSAEPDDEKAEETMETDTPPPQQQECMEAELSTSDPTSSSDITTQQREE
ESSDVTSSTQSINSVDEDVALGGDVASQSEDVTQSFVVQINPEDITPTDLTDAQPSNITS
HPCSSDIPATSFMSVSSSNFSKHSISFAYTCDGTTEPSDSINLTPRVPSINVAHISDVQP
EPSDIIVSLKQNSSANSTYTSDVQSDLSNVTVDPEHKPSINSTHIINVQSETSNITISSE
HEPSISSTPMSDVQSETSFKYEPGNNSAYVCDVKPEHSDISMSPIYKPGVNFAHTSDVQP
EPSECESCTNSDHICDVQSEANDIIINSKDEMSINSAHTFDVQPEPSDNTVSLTHKPDIS
STSGSDVPSGPGDITDSLGYDPDFNSTHTGHVQSESNNSPKHKLPINSAHTYDVQSGPSD
ITDGHRFESEFNSTHICDVQSGPSDMSVNSKRKSSIDSAQIDDAQSDPSDISIGSKQEYS
INSAQIDNVQSEPSDISIGSKQESSINSAQIDNVQSEPSNISISSKQETSINSTQIDDVQ
SEPSDISISSKNKLRINSAQIDDVQSAPSGISVSSEQETSIISAQVDDVQSEYSDISISS
KHEPSINSTQTDDIQSEPIDISFGSKQESCINSAQMYDVQSEPSDISISSTQETSINSAQ
MYDVQLEPSDISISFKDKPSINSSQVDDVQSEPSDICFGSEQETCINSAQIYDVQSEPSN
ISFSSKQETSINSTQMYDVQSEPSDISISSNQETSINSTQMYDVQSEPSDISISSNQETS
INSTQMYDVQSEPSDISISSNQETSINSTQMHDVQSEPSDISISSNQETTINSTQMYDVQ
SDPSDISISSKHKPSINSARMYDVQSEPSDISISSKHNPSIDSTQMFDVQSEPSDFSISS
KHKPSIDSTQIYDVQSAPSGLTISYKQKTSINSAQMYEVQSEPSDFSVSSKRKPSIDSIH
MYDDVQLKSSNFMVSRTPEPTYKIIPEPSSSVSVNVSGLSSVLASVSQGSVQHIFQRTLS
PAEVLHVHSYAKGDYSDIEPRIQHERDSDSDSESQDDNKKEAERPAEAQYRLPRLPRHHP
LIKDSISDEELQDQAASEEDGLDGEAWARPLTQLWQNRPYNPDREREYNREMGLRPPYCS
ICMLFQAHHRSEGAESEPAVVLRGGQMRTKPLIPERCFTITTEESADVQPSTAHLEEDGT
SLLISCSLCSVRVHTSCYGVASGRVSKDWKCARCKANAFAESCCLCSLRGGALHRANNGK
WVHVLCAVAVQEARFVNITERSPVDLSGIPLQRFKLKCYYCKRRMKKTLGCCVQCSHGRC
PTSYHPTCAQAAGVIMHPDDWPFVVYVTCCRHKGPVQSERNKSAMRELSVGQRVICKHKN
GRYYQCEVIQLTKETFYEVNFDDGSFSDNLFPEDIVNRDCAQLGPPPQGEVVQVRWTDGL
VYGAKFVAAHVIQMYQVEFEDGSLLTAKRDDVYTLDEELPKRVKSRLSKASDMRFDGMFG
EKKVQESKRQRVINSRYRGDYIEPVIYRAIME
NT seq 6039 nt   +upstreamnt  +downstreamnt
atggcttcggactcggtctctcaaagctcccagagtcctgccaccaggatcatgaccttt
catcccacaaaagaggagttcaaagacttcaacagatacattgcatatatggagtcgcag
ggggcgcacagggccgggatggcaaaggtggtgccaccgaaggactggaagccccggcgc
acatatgatgacattgaagatctggtgattcccacccctattcaacaagtggtcactggc
caatcgggtctcttcactcagtacaacatccagaagaagccaatgacagtccgcgagttc
cgcaaaaccgccaacacagacaagttctctaatcccagatatgctgactttgaagaactg
gagagaaaattttggaagaatttaacattcaatccaccattatatggggcagatgtcagt
ggaaccctctatgatcccgacgtgatggagtggaatattggccgcctgaacactatattg
gacatggtggagagagagagtggaatcacaatcaaaggggtgaacactccatatctgtat
ttcgggatgtggaagagcacattcgcctggcacacggaggacatggatctctacagcatc
aactacctgcactttggagaacccaagtcctggtatgttgtgcctccagagcacgggaaa
agattggagcgtcttgctaaaggatttttccctggaagcgcccaaagttgcgaagccttc
ttgcgacacaaaatgactttaatatcaccgtctattctgaggaagtatgggatacccttt
gagaaggtcacacaggaagcaggccagttcattgtcacattcccatatggatatcatgct
gggtttaaccacggcttcaactgcgcagaatccaccaacttcgccactcagcgctggatt
gattatggaaagctggcaacattatgttcctgccggaaggacatggtgaagatttccatg
gacgtgtttgtgcacaagttccagccagaacgatacaaactttggaaagcaggaaaggat
aatgtgcctattgaccactcgaagcccactccagaagtggctgaaatccagaaagagaac
gagaaaggagagatcagcgatagcgagagagcggaaacactggaagagagaggagaagca
gaggcaggagaccagcagaaggcaaacacagatgatggagaggaggacaaagctgaagcc
ttctctgagaaggtggtgaagagagaaagcgatgctggaaaggagaaagcagaagcagag
gtagagaagagtgtgagggatgaagagcccagcagcacttcagaacagatcagcagcagt
agtccaaagcagaacacggggcagaagaggctcagatccagcactgacaatgaagcaaaa
gacgacaatcaagtaaagatagaagtggaggaggttgagaagaagaaagccaaactcggc
cagaatgaaacagacaacaacgaggaacagtctgtctctgctgagccagatgacgagaaa
gctgaggagaccatggagacagacacgcctcctccacaacagcaagagtgcatggaggcg
gagctctccacgtcagaccccacctccagcagtgacatcacgacacagcaaagagaagaa
gaatccagcgacgtcacctcatccacacagtccataaacagcgttgatgaagatgtggct
ctgggcggtgatgttgcctctcagtctgaagacgtcactcaaagctttgttgtccaaatc
aaccctgaggatatcactccaactgatctcactgatgctcaaccaagtaacatcacgtcc
catccatgttccagtgacatccctgcgacttcctttatgtctgtaagcagcagtaacttc
tccaaacacagcattagcttcgcctacacttgtgatggcaccacagaacccagcgacagc
atcaaccttactccacgtgtgcctagcattaatgttgcccatatttctgatgtccagcca
gaacccagtgacatcatcgttagccttaaacagaattccagtgctaactccacctatacc
tctgacgttcagtcagatctaagcaacgtcaccgtcgaccctgaacacaagcccagcatt
aactccacccacatcatcaatgtccaatcagaaaccagcaacatcaccatcagctcggaa
cacgagccaagcattagttccacccctatgagtgatgtccaatcagaaactagctttaaa
tatgagcctggcaataactctgcctatgtttgtgacgtcaaacctgaacacagtgacatc
agtatgagcccgatatataagcctggcgttaacttcgctcacacatctgatgtccaacca
gaacccagcgaatgtgagtcctgcacaaactcagaccacatctgtgatgtccaatcagaa
gccaatgacatcatcatcaactctaaagatgagatgagcattaactcggcacacaccttt
gatgtccaaccagagcccagtgacaacaccgtcagccttacacataaacctgatatcagc
tccaccagtggttctgatgtcccatcaggacctggtgacatcaccgacagccttggatat
gaccctgattttaactccacccacaccggtcatgtccaatcagaatccaacaacagccct
aaacacaagcttcccattaactccgcccatacctatgatgtccaatcaggacccagcgac
atcaccgacggccataggtttgagtctgaatttaactccacccacatctgtgatgtccaa
tcaggacccagcgacatgtctgtcaactctaaacgtaagtctagcattgactccgcccaa
attgatgatgcccaatcagatcccagcgacatctccatcggctctaaacaggagtacagc
attaactccgcccaaattgataatgtccaatcagaacccagcgacatctccatcggctct
aaacaggagtccagcattaactccgcccaaattgataatgtccaatcagaacccagcaac
atctccatcagctctaaacaggagaccagcattaactccacccaaattgatgatgtccaa
tcagaacccagcgacatctccatcagctctaaaaacaagctccgcattaactccgcccaa
attgatgatgtccaatcagcgcccagcggcatatctgtcagctctgaacaggagacaagc
atcatctcggcccaagtcgatgatgtccaatcagaatacagtgacatctccatcagctct
aaacatgagcccagcattaactccacccaaactgatgatatacaatcagaacccatcgac
atatcttttggctctaaacaggagtcctgcattaactccgcccaaatgtatgatgtccaa
tcagaacccagtgacatctccatcagctctacacaggagaccagcatcaactccgcccaa
atgtatgatgtccaattagaacccagtgacatctctattagctttaaagacaagcccagc
attaactcctcccaagttgatgatgtccaatcagaaccaagcgacatatgttttggctct
gaacaggagacctgcataaactccgcccaaatttatgatgtccaatcagaacccagcaac
atctccttcagctctaaacaggaaaccagcatcaactccacccaaatgtatgatgtccaa
tcagaacccagcgacatctccatcagctctaatcaggaaaccagcattaactccacccaa
atgtatgatgtccaatcagaacccagcgacatctccatcagctctaatcaggaaaccagc
attaactccacccaaatgtatgatgtccaatcagaacccagcgacatctccatcagctct
aatcaggagaccagcattaactccacccaaatgcatgatgtccaatcagaacccagcgac
atctccatcagctctaatcaggagaccaccattaactccacccaaatgtatgatgtccaa
tcagatcccagcgacatctccatcagctctaaacacaagcccagcattaactccgcccga
atgtatgacgtccaatcagaaccaagcgacatctccatcagctctaaacacaaccccagc
attgactccacccaaatgtttgatgtccaatcagaacccagcgatttctccatcagctcc
aaacacaagcccagcattgactccacccaaatatatgatgtccaatcagcgcccagtggc
ctcaccatcagctacaaacagaagaccagcattaactccgcccaaatgtatgaggtccaa
tcagaacccagcgacttctctgtcagctctaaacgcaagcccagcattgactccattcac
atgtatgatgatgtccagttgaagtccagtaacttcatggtcagccgaacacccgaaccc
acctataagatcatcccagagcccagcagcagtgtgagtgtaaatgtgtcaggcttgagc
tctgtgttagcgagtgtcagtcagggctcagttcaacacatcttccagaggacactgagc
cctgcagaggtgctgcacgtccacagctacgctaaaggagattacagcgacattgagccg
cgcattcagcatgagagagacagtgattctgatagcgagtctcaggatgacaacaagaaa
gaagccgagcgtccagctgaagctcagtacagactacccagactgcccagacaccaccct
ctgataaaggacagcatcagtgatgaagagctgcaggatcaggcggcatcagaggaggac
gggctggacggagaggcctgggctcgacctctgacccagctgtggcagaacagaccgtac
aatccagatcgagagagagagtacaacagagagatgggtctgcggcctccatactgctcc
atctgcatgctcttccaggcacatcacaggtctgaaggagcagagagcgagccggctgta
gtgctgcgcggaggtcagatgagaaccaaacctctgattcctgagagatgctttaccatc
accactgaggagagcgcagacgtccagccatccacagctcacctggaggaggacggcact
agtctgctcatcagctgctccctttgcagtgtccgagtgcacactagttgttacggtgtt
gcctcaggaagagtctctaaagactggaagtgtgcccgctgtaaagccaacgcctttgct
gagagttgctgtttatgttcgttgagaggtggagcgttgcacagagccaataatggcaaa
tgggttcatgtgctgtgtgcagtggcagtacaggaggctcgcttcgtgaacatcactgaa
cgatcaccagtggatctcagcggcattcccttacagagattcaaactgaaatgctactac
tgcaagcggcggatgaagaaaacgctgggctgttgtgtgcagtgttctcacggtcgctgt
cccacctcatatcacccgacctgtgcacaggccgccggcgtcatcatgcacccagacgac
tggcctttcgtcgtctacgtcacctgctgccgccacaaaggaccagtacagtctgagcgt
aataagtcagccatgagagagctcagcgtgggccaaagggtcatctgcaagcacaaaaac
ggacgctactaccagtgtgaagtcatacagctgacaaaagagactttttatgaggtcaac
tttgatgatggctccttcagcgataaccttttcccagaggatattgtgaaccgggactgt
gctcagctgggtccgccaccgcagggtgaagtggttcaagtcagatggaccgacggtctc
gtctatggagccaaattcgtggcagctcatgttattcagatgtatcaggtggagtttgag
gatggatctctgctgactgctaagagagatgacgtctacacccttgatgaagagctgccc
aaaagggtcaaatcacgtctgtctaaggcctcggacatgcgctttgacgggatgtttgga
gagaagaaggtccaggagagcaagcggcagcgagtgatcaactccaggtacagaggagac
tacatcgagcccgtcatctacagagcaatcatggagtaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (2)   
   KEGG ENZYME (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (63)   
   KEGG ORTHOLOGY (1)   
   RefGene (57)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   ZFIN (1)   
Protein sequence (3)   
   UniProt (1)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (9)   
   Pfam (9)   
All databases (83)   

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