KEGG   Danio rerio (zebrafish): 30731
Entry
30731             CDS       T01004                                 
Symbol
smarcb1b
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1b
  KO
K11648  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1
Organism
dre  Danio rerio (zebrafish)
Pathway
dre03082  ATP-dependent chromatin remodeling
dre03250  Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:dre00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    30731 (smarcb1b)
  09125 Information processing in viruses
   03250 Viral life cycle - HIV-1
    30731 (smarcb1b)
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01009 Protein phosphatases and associated proteins [BR:dre01009]
    30731 (smarcb1b)
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:dre03021]
    30731 (smarcb1b)
   03036 Chromosome and associated proteins [BR:dre03036]
    30731 (smarcb1b)
Protein phosphatases and associated proteins [BR:dre01009]
 Protein serine/threonine phosphatases
  Phosphoprotein phosphatases (PPPs)
   Protein phosphatase-1
    PP1-interacting proteins (PIPs)
     30731 (smarcb1b)
Transcription machinery [BR:dre03021]
 Eukaryotic type
  RNA polymerase II system
   Coactivators
    BAF/PBAF complex
     30731 (smarcb1b)
    SWI/SNF complex
     30731 (smarcb1b)
Chromosome and associated proteins [BR:dre03036]
 Eukaryotic type
  Chromatin remodeling factors
   BAF complex
    30731 (smarcb1b)
   PBAF complex
    30731 (smarcb1b)
   SWI/SNF complex
    30731 (smarcb1b)
SSDB
Motif
Pfam: SNF5 INI1_DNA-bd DUF1679
Other DBs
NCBI-GeneID: 30731
NCBI-ProteinID: NP_571523
ZFIN: ZDB-GENE-991008-16
Ensembl: ENSDARG00000011594
UniProt: Q5XJR9
Position
21:15601167..15618777
AA seq 370 aa
MALSKTFGQKPIKFQLEEDGDFYMIGSEVGNYLRMFRGSLYKRYPSLWRRLASVEERKKI
VASSHATSVTLLKASECEEIFEGNDEKYKAVSISTEPPAYLREQKTKRNSQWVPTLPNSS
HHLDAVPCSTTINRNRMGRDKKRTFPLCFDDHDPAVIHENASQAEVLVPIRLDMEIDGQK
LRDAFTWNMNEKLMTPEMFAEILCDDLDLNPLTFVPAIASAIRQQIESYPTDSILEEQTD
QRVIIKLNIHVGNISLVDQFEWDMSEKENSPESFALKLCSELGLGGEFVTTIAYSIRGQL
SWHQRTYAFRSDFSENPLPTVEIAIRNTGDADQWCPLLETLTDAEMEKKIRDQDRNTRRM
RRLANTAPAW
NT seq 1113 nt   +upstreamnt  +downstreamnt
atggcgttgagtaaaacatttggacaaaaaccaataaaatttcaactcgaagaagatgga
gatttttacatgataggttcagaggttggcaactacctgcgtatgttcagaggctcctta
tataagcgatacccttctttatggagacgccttgcatccgttgaggagaggaagaagatt
gtagcgtcatcacacgccaccagtgtcaccctgctgaaggcgtctgaatgtgaggagatc
ttcgagggtaatgatgagaaatacaaagccgtgtccatcagcacagagcctccggcatat
ctcagggagcagaagacgaagaggaacagtcaatgggtgcccaccctgcccaacagctct
caccacctagatgccgtgccttgttccaccactatcaacagaaaccgaatgggacgtgac
aagaagaggacctttccattatgtttcgatgaccacgaccctgcagtcatccacgaaaat
gcttcccaggctgaggtcctggtgccgatacgcctggacatggagattgatggacagaag
ctcagagatgccttcacctggaacatgaacgagaagcttatgactccagagatgtttgct
gagatcctgtgtgatgacctggacctcaatccactcaccttcgtccctgccatcgcctca
gccattagacagcagattgagtcctaccctacagacagcatcctggaagaacagacggac
cagagggtcatcattaagctaaacatccacgtagggaacatctctttggtggaccagttt
gaatgggacatgtcagagaaggagaactcgccagaatcattcgctttgaagctctgctct
gagctgggtctcggaggagagttcgtcaccaccattgcctacagcatccgcgggcagctt
agctggcatcagaggacgtatgccttcaggtctgatttcagtgagaacccgttaccaact
gtagagatcgccattcgcaacacaggagatgctgatcagtggtgccctctgctggagact
ctgacagatgcagagatggagaagaaaatcagagatcaggacagaaacacaaggcgtatg
cgacgacttgccaacacggcccctgcatggtaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (19)   
   KEGG ORTHOLOGY (1)   
   RefGene (13)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   ZFIN (1)   
Protein sequence (3)   
   UniProt (1)   
   RefSeq(pep) (2)   
DNA sequence (8)   
   RefSeq(nuc) (2)   
   GenBank (3)   
   EMBL (3)   
Protein domain (3)   
   Pfam (3)   
All databases (40)   

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