KEGG   Danio rerio (zebrafish): 325221
Entry
325221            CDS       T01004                                 
Symbol
ell
Name
(RefSeq) RNA polymerase II elongation factor ELL
  KO
K15183  RNA polymerase II elongation factor ELL
Organism
dre  Danio rerio (zebrafish)
Pathway
dre03250  Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:dre00001]
 09120 Genetic Information Processing
  09125 Information processing in viruses
   03250 Viral life cycle - HIV-1
    325221 (ell)
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01009 Protein phosphatases and associated proteins [BR:dre01009]
    325221 (ell)
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:dre03021]
    325221 (ell)
Protein phosphatases and associated proteins [BR:dre01009]
 Protein serine/threonine phosphatases
  Phosphoprotein phosphatases (PPPs)
   Protein phosphatase-1
    PP1-interacting proteins (PIPs)
     325221 (ell)
Transcription machinery [BR:dre03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Super elongation complex (SEC)
     325221 (ell)
    Little elongation complex (LEC)
     325221 (ell)
SSDB
Motif
Pfam: ELL Occludin_ELL Seryl_tRNA_N
Other DBs
NCBI-GeneID: 325221
NCBI-ProteinID: NP_956001
ZFIN: ZDB-GENE-030131-3946
Ensembl: ENSDARG00000000568
UniProt: Q6PEG4
Position
22:complement(20847587..20924564)
AA seq 633 aa
MAALKEEQCYGLSCGRVSNGSKISVYHVKLTDSALRAFEDYQSNKGLTAKPLIGFTGSQG
KISIPQSENPNELRTFTFYLSNVGKDNPQGSFDCIQQYITSEGSIQLDCLGGIQDKITVC
ATDDSYQKARQSMAQVEEETRSRGAIVIKPGGRYVGKRVQIRKPITGVSDVAPSRRTSRP
VIISSSAQKKSPPRPLRERLVHLLALKPYRKPELLVRLTKDGLSFQDKETLDSLLQQVAN
LNSKDNTFTLKDCLFKEVQKDWPGYTEVDQQILKRILVRKLCKPQSNAPVSVESPVSPHK
EPASSSPSQLNTHNPQKRPAADFIDPLANKKPRISHLVSKSTGLINGKLSSSNGKDTSSS
QATETSSSSQFPPLEIPRPFDPLSDVSNDSNGRDCEGQEAAVAERLSQPPSFAPRSATQE
ERQTSMSPPHSSLDSSLTQTTQPSLHGKSKKKSKKHKDKDKSKDKDRDRERDAKKERRVD
EERGLDQRKPCDVTTSDKSTGLNGTCNSSSIPASSSETADYLIKYTVISSPEQRQTYKND
FNSEYSEYRGLHARIESITRQFTILDSELKQLQQGTDKYKTIHNQILEEYRKIKKTNPNY
SQEKNRCEYLHNKLAHIKKLIAEYDQQQLQNWH
NT seq 1902 nt   +upstreamnt  +downstreamnt
atggcggcgttgaaggaggagcagtgttacggactgtcctgtggaagagtgagcaatggc
agcaaaatctccgtctatcacgtcaagctgacagacagcgctctgcgggcgtttgaggac
taccagagcaacaagggtctgactgctaaaccactaataggattcacaggaagccaaggg
aaaatctcgataccgcagtcggagaatccaaatgagctgcgaacgtttaccttctacctg
tccaatgtgggcaaagacaatccccagggcagcttcgactgcattcagcagtacattaca
agtgaagggagcattcagttggactgtctgggaggaatccaggacaaaatcacggtgtgc
gccactgacgactcataccaaaaagccaggcaaagcatggctcaggtcgaggaggagacc
cgcagccgcggagccattgtcatcaagcctggagggagatatgtgggtaaacgggtacaa
atccgtaagcctataacaggcgtgtctgatgtggccccatcacggcggacgtccaggcca
gtgatcatctccagcagcgctcagaagaagagcccgccgcgaccgctgagggaacgcctc
gtgcacctgctggccctaaaaccctaccgcaaacctgaactcctggtgcggctcacgaaa
gatggcctgtcttttcaggacaaggagacactggacagcctcctgcaacaggtggctaac
ttgaatagtaaggacaacaccttcacattgaaggactgtttgtttaaggaagttcagaag
gactggcctggttacactgaggtggaccagcagattctgaagagaattctagtacgaaaa
ctgtgtaagcctcagagcaatgccccggtgtctgtggagagcccggtcagcccgcacaaa
gagccagccagcagttcgccctctcagttgaacacccacaacccccagaaacgacctgca
gccgacttcatcgatcccctggccaataagaaacccagaatatcgcatctagtcagcaag
tctacaggactcatcaatggcaagctgagctcatccaatggaaaggacacctctagttct
caagcaactgagacctcgtcgagctctcagttccctccactggagatcccccgacccttc
gaccccctttcagatgtcagcaacgactccaacggcagagactgtgaaggtcaggaggca
gcggtggcagagagactaagtcagccaccgtcattcgcccctcgctccgcgacacaagag
gaaaggcagacctccatgtccccaccccacagcagtttggacagctctctgacccagacc
acccaaccctctctgcacggcaagtctaagaagaagtctaaaaaacacaaggacaaagat
aaatccaaagacaaggacagggatcgagagagggacgcgaagaaggagaggagggttgat
gaagagcgtggcttggatcaaaggaaaccctgtgatgtcacgacgagcgataagagtaca
ggtctgaacggaacatgcaacagctccagtattcctgcgtcttcatcagagacggcagac
tatttaataaagtacacagtgataagctcgcccgagcaacgtcagacttacaaaaacgac
ttcaactccgagtacagcgagtaccggggcctccatgcgcggatagagagcatcactcgg
cagttcactatactcgactcggagctcaaacaactccagcaaggcacagacaagtacaag
acaatccacaatcagatacttgaagagtatcgcaaaataaaaaagactaatccgaactat
agccaagagaagaaccgctgtgaatatctacacaacaaactggcacatataaaaaaactg
atagcagaatatgatcaacagcaacttcaaaactggcactaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (15)   
   KEGG ORTHOLOGY (1)   
   RefGene (9)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   ZFIN (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (3)   
   RefSeq(nuc) (1)   
   GenBank (1)   
   EMBL (1)   
Protein domain (3)   
   Pfam (3)   
All databases (28)   

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