KEGG   Danio rerio (zebrafish): 334669
Entry
334669            CDS       T01004                                 
Symbol
polr2c
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB3
  KO
K03011  DNA-directed RNA polymerase II subunit RPB3
Organism
dre  Danio rerio (zebrafish)
Pathway
dre03020  RNA polymerase
dre03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:dre00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    334669 (polr2c)
  09124 Replication and repair
   03420 Nucleotide excision repair
    334669 (polr2c)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:dre03021]
    334669 (polr2c)
   03400 DNA repair and recombination proteins [BR:dre03400]
    334669 (polr2c)
Transcription machinery [BR:dre03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Core subunits
     334669 (polr2c)
DNA repair and recombination proteins [BR:dre03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      334669 (polr2c)
SSDB
Motif
Pfam: RNA_pol_A_bac RNA_pol_L
Other DBs
NCBI-GeneID: 334669
NCBI-ProteinID: NP_001161428
ZFIN: ZDB-GENE-030131-6609
Ensembl: ENSDARG00000033596
UniProt: Q7ZV11
Position
25:complement(14369496..14378869)
AA seq 275 aa
MPYANQPTVKITELSDENVKFVIENTDLAVANSIRRVFMSEVPTIAIDWVQIDANSSVLH
DEFVAHRVGLIPLTSDDIVDKMQYSRDCTCDDFCPECSVELTLDVRCTEDQTRHVTSRDL
LSNNPRVIPVTSRSRDNDPNDYVEQDDILLVKLRKGQELRLRAYAKKGFGKEHAKWNPTA
GVAFEYDPDNALRHTVYPIPQEWPKSEYSEIEEDGVQAQYDPNGKPERFYYNVESCGSLR
PETIVMSALAMLKKKLSDLQTQLSHEIQSDVLTIN
NT seq 828 nt   +upstreamnt  +downstreamnt
atgccgtacgccaaccagcccacggtaaaaatcacggaactctcggacgagaatgtgaag
ttcgtgatcgagaacacggatctcgcggttgcaaactctattcgacgtgtgttcatgtca
gaagttccaaccattgctattgattgggttcagatcgatgccaactcctctgtgctccac
gatgagtttgttgctcatagagtgggattaattccgctcacaagtgatgacatcgttgac
aagatgcagtactcgagagactgcacgtgtgacgatttctgtcccgagtgttcggttgag
ttgacgctggacgtgagatgcactgaagaccagacacgtcacgtgacctcacgagatctt
ctgtctaataacccgcgagtcattcctgtaacatccagaagtcgagacaatgaccccaat
gactacgtagagcaggatgacatcctgctggtaaagctgaggaagggtcaagagctgcgg
ctcagagcttacgctaaaaaaggcttcggcaaggaacacgccaagtggaatcccactgca
ggggtggcgttcgagtatgacccagacaatgcgctgagacacacagtctaccctattcca
caggaatggcctaaaagtgaatattcagagattgaagaagatggggttcaggctcaatat
gatcctaatggcaaaccagaaaggttctattacaacgtagagtcctgcggttcacttcga
ccggagaccatcgtcatgtctgctcttgctatgcttaagaagaaactgagtgatttacag
acacaactcagtcatgagattcaaagcgatgtgctcaccattaattaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (14)   
   KEGG ORTHOLOGY (1)   
   RefGene (8)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   ZFIN (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (9)   
   RefSeq(nuc) (1)   
   GenBank (4)   
   EMBL (4)   
Protein domain (2)   
   Pfam (2)   
All databases (33)   

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