KEGG   Danio rerio (zebrafish): 368235
Entry
368235            CDS       T01004                                 
Symbol
yars1
Name
(RefSeq) tyrosine--tRNA ligase, cytoplasmic
  KO
K01866  tyrosyl-tRNA synthetase [EC:6.1.1.1]
Organism
dre  Danio rerio (zebrafish)
Pathway
dre00970  Aminoacyl-tRNA biosynthesis
Brite
KEGG Orthology (KO) [BR:dre00001]
 09120 Genetic Information Processing
  09122 Translation
   00970 Aminoacyl-tRNA biosynthesis
    368235 (yars1)
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01007 Amino acid related enzymes [BR:dre01007]
    368235 (yars1)
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:dre03016]
    368235 (yars1)
   03029 Mitochondrial biogenesis [BR:dre03029]
    368235 (yars1)
Enzymes [BR:dre01000]
 6. Ligases
  6.1  Forming carbon-oxygen bonds
   6.1.1  Ligases forming aminoacyl-tRNA and related compounds
    6.1.1.1  tyrosine---tRNA ligase
     368235 (yars1)
Amino acid related enzymes [BR:dre01007]
 Aminoacyl-tRNA synthetase
  Class I (A)
   368235 (yars1)
Transfer RNA biogenesis [BR:dre03016]
 Eukaryotic type
  Aminoacyl-tRNA synthetases (AARSs)
   Other AARSs
    368235 (yars1)
 Prokaryotic type
    368235 (yars1)
Mitochondrial biogenesis [BR:dre03029]
 Mitochondrial DNA transcription, translation, and replication factors
  Mitochondrial transcription and translation factors
   Other mitochondrial DNA transcription and translation factors
    368235 (yars1)
SSDB
Motif
Pfam: tRNA-synt_1b tRNA_bind
Other DBs
NCBI-GeneID: 368235
NCBI-ProteinID: NP_958473
ZFIN: ZDB-GENE-030425-2
Ensembl: ENSDARG00000035913
UniProt: Q6TGS6 A0A0R4I9C1
Position
19:30884955..30895274
AA seq 529 aa
MGEQLSPDEKFQLITRNLQEVLGEERLKEILKERELKVYWGTATTGKPHVAYFVPMSKIA
DFLKAGCEVTILFADLHAYLDNMKAPWELLELRVKYYEQVIKAMLESIGVPLDKLKFVKG
TDYQLSREYTLDVYRLSSMVTEHDAKKAGAEVVKQVEHPLLSGLLYPGLQALDEEYLKVD
AQFGGVDQRKIFTLAEKYLPSLGYTKRSHLMNPMVPGLTGSKMSSSEEESKIDLLDKNQD
VKKKLKKAFCEPGNVENNGVLSFVKHVLFPLHSEFVIKRDPKFGGDKVYTDFEEVEKDFA
AEQIHPGDLKASVELALNKLLDPIRKKFESPELKKLTSSAYPEPSKNKGGAKGNPKQTTD
DDEVIPSRLDIRVGKVISVEKHPDADSLYLEKIDVGEEQPRTVVSGLVAYITEEQLQDRL
VVLLCNLKPQKMRGIESQAMVLCASIEGEPRKVEPLDPPEGSAAGDRVYVEGYESGKPDD
ELKPKKKVFEKLQVDLKISGEFVAQWKEQNLMTKLGRITCKTLKGGNIS
NT seq 1590 nt   +upstreamnt  +downstreamnt
atgggagagcagctgagtcctgatgagaagttccagctcatcaccagaaaccttcaggag
gttcttggtgaggagaggttgaaggagatcctgaaggagcgggaactgaaggtttactgg
ggaacagcgactacaggcaaaccccatgttgcttactttgtccccatgtcaaaaattgct
gacttcctgaaggcgggctgtgaggtgaccatcctctttgctgatctccatgcttatctg
gataacatgaaggctccctgggagctgctggagctccgggtgaagtattatgagcaggtc
atcaaggccatgttggagagcattggagttcctcttgacaaactcaaatttgtcaaaggc
acagattatcagctcagcagagaatacactctggatgtttaccgactgtcatccatggtc
actgaacacgatgcaaagaaagcaggggcagaggtggtcaaacaggttgagcatcctctt
ctcagtggtctgctgtatcctggactacaggcactggatgaggaatacctaaaagtagat
gctcagtttggtggtgtggaccagaggaagatcttcacattagctgagaagtacctgcct
tcccttgggtacaccaaacgtagccacttgatgaacccaatggttccaggactgactggg
agcaagatgagctcctcagaggaggaatccaagattgacctgctagacaagaaccaagat
gtgaagaagaagctgaagaaggcgttctgtgagcctggaaatgtggagaataatggagtt
ctgtcttttgtcaaacacgtgcttttccctctgcactcagagtttgtgattaaaagagat
ccaaagtttggaggtgacaaagtctacacagattttgaggaagtggagaaggactttgct
gcagagcaaattcatccaggtgacctgaaggcttcagtagaattggctcttaacaaactg
ttggaccctatcaggaagaagtttgagagccctgagttgaaaaaactgacatcatctgct
tacccagaaccatctaaaaacaaaggaggagcaaagggcaaccctaaacaaaccacagat
gacgatgaggtcatcccatccagattagacatcagagtgggaaaagtcatcagtgtagaa
aagcatccagatgcagactcactatatttagagaagattgatgtgggtgaagaacagccg
cggactgtagtgagtggactggtggcttatatcacagaggaacagcttcaggaccgactc
gttgtgctgctctgcaacttaaagccccagaagatgagggggattgaatctcaagcaatg
gtgctttgtgcttcaatcgaaggagagcccaggaaagtggagcctttggatccaccagaa
ggatctgcagcaggagatcgtgtttacgtagagggctatgaatctggcaaaccagacgat
gaattgaaaccaaagaaaaaggtgtttgagaagttacaggttgatctgaagatctccggc
gagtttgttgcacaatggaaagagcaaaatctgatgaccaaacttggacgaatcacctgc
aaaacacttaaaggtggaaatatcagctag

  All links  
Ontology (5)   
   KEGG BRITE (5)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical substance (6)   
   KEGG COMPOUND (6)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (49)   
   KEGG ORTHOLOGY (1)   
   RefGene (43)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   ZFIN (1)   
Protein sequence (6)   
   UniProt (2)   
   SWISS-PROT (1)   
   RefSeq(pep) (3)   
DNA sequence (11)   
   RefSeq(nuc) (3)   
   GenBank (4)   
   EMBL (4)   
Protein domain (2)   
   Pfam (2)   
All databases (83)   

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