KEGG   Danio rerio (zebrafish): 393101
Entry
393101            CDS       T01004                                 
Symbol
scn1laa
Name
(RefSeq) sodium channel, voltage-gated, type I-like, alpha
  KO
K04834  voltage-gated sodium channel type II alpha
Organism
dre  Danio rerio (zebrafish)
Brite
KEGG Orthology (KO) [BR:dre00001]
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04040 Ion channels [BR:dre04040]
    393101 (scn1laa)
Ion channels [BR:dre04040]
 Voltage-gated cation channels
  Sodium channel, voltage-gated (Nav)
   393101 (scn1laa)
SSDB
Motif
Pfam: Ion_trans Na_trans_assoc Na_trans_cytopl PKD_channel GPHH Zip ATP-synt_B IQ Lustrin_cystein ATP-synt_F6
Other DBs
NCBI-GeneID: 393101
NCBI-ProteinID: NP_956426
ZFIN: ZDB-GENE-040426-751
Ensembl: ENSDARG00000086819
UniProt: Q20JQ9
Position
9:complement(49906051..50001606)
AA seq 1955 aa
MAHMFTPPGPQSLRKFTRESLKAIESRIAEENAKKSKNTEERNKDNECSRKPNSGLEAGK
TLPFIYGEVPKGLVSTPLEDLDQFYSNHTTFIVVSKKKEIYRFNATPALYIFSSFNLLRR
ISIQILVHFLFNFIIICTILANCAFMVYTQTPDWAKNVEYVFTGIYTLEALVKITARGFC
VGRFTFLRDPWNWLDFIVIVMAYVTEFVDLGSVSALRAFRVLRALKTISVVPGLKTIVGA
LIQSVKKLSDVMILTLFCLSVFALVGLQLFMGILKQKCVYSTSFTENKEACYKNKTCRDY
INNPSNQYFLPGKKDALICGNSSDAGQCPEGYTCLKAGKNPDYGYTSFDSFGWAFLSLFR
LMTQDFWENLYQQTLRAAGKTYMIFFVLVIFLGSFYLVNLILAVVAMAYDEQNQATIDEA
LKKEEEFNAMLEQITRQEQEAEAAAEQSKCEGLSGEKTDSSSDASKLSSKSAKERRNRKK
KRQHQGESEKEEDSIKEGNDRKPNFTFAVDGKIRRSRDRSYTSPRQSPLSFQGSLLTPRR
DSKASVFSFRGRIHSDNNYADDEQSMFEETGSRRDSLFLPTRPERLFSNVSKSSLTPHLL
LPSNGKARYVDDSNGMVMVTSGASAPNSPVIALNTPEVSRKRAMFDDTCADSDDERRSRC
NSQNFSKAYRQSMRERALSVASGSNNPAECSEIFKQRCEEWWFEFAENYLIWDCSPTWLR
IKEVVHMIVMDPFADLFITICIVINTVFMAMECYPMDGPYSSMLSTANVVFIGIFTAEMI
FKVIALDPYSYFLEGWNIFDSIIVTLSLMELCLANVLSGIGFLRPFRLLRVFKLAKSWPT
LNMLIKIIGNSLGALSNLTLVLAIIVFIFAVVGMQLFGKSYGECVCKISSDCMLPRWHMN
DFFHSFLIVFRVLCGEWIETMWDCMEVAGQPLCLTVFMMVMVIGNLVVLNLFLALLLSSF
SADNLAVSGEEDENNLQIAVRRIRKGFTFIKTCLQSFFRSGCLRKKKQKSADGNMIVNCK
ERKDSTNHTTIELVKSTGGTDLDSDTENFISNPSLTVSVPIAAEESDFECLNTEDFSSLS
SDLEEDKEKLSDVASSFSEGSTVDLRPLGKDGEDALELVLEEEAYPEPCFTAGCVRRFRC
CQVDEEKGIWKKWWLLRQTCYNIVEHSWFETFIVFMILLSSGALAFEDIYLDTRKSVKTI
LEFADKVFTYIFILEMLLKWVAYGFAKYFTNLWCWLDFVIVDVSLISLVANALNYSELSA
IKSLRTLRAFRPLRALSRFDGMRVVVNALLGAIPSIMNVLLVCLIFWLIFSIVGVNFFAG
KFSECINITTEQRLPVSEVYNKTDCERMGKGVRWRNVIINFDNVGNGYLALLQVATFKGW
MPIMYAAVDSRNPEEQPEYEVNLYMYLYFVIFIILGAFFTLNLFIGVIIDNFNQQKKKFG
GQDIFMTEEQKKYYNAMKKLGSKKPQKPIPRPKNKIQGLIFDLVTKQAFDIFIMVLIWLN
MVTMMLETEDQSIEMTRALYWINVIFIVLFTTECVLKMIALRHYFFTVGWNVFDFIVVIL
SIVGMSLTEVIKKYFVSPTLFRVIRLARIGRVLRLIRSAKGIRTLLFALMMSLPALFNIG
LLLFLVMFIYAIFGMSNFAYVKKTAGIDDMFNFETFPNSMLCLFQITTSGGWDGLLAPML
NSKPPDCDPTKNFTGSSVVGDCGNPSIGIFFFVSYIIICFLIVVNMYIAVILENFSVATE
ESAEPLSEDDFDRFYEVWEKFDPKATQFMEYGKLSDFADSLDPPLRIPKPNRFQLMSMDL
PMVTGDRIHCLDILFAFTKRVLGEGGEMDMLHGQMEDRFMQSNPSKSSYEPITTTLRRKH
EDMSAAVIQRAFRKHLVRDSMKKVRNFKKKNKHQNGKVPSNQSMDKDMCNEDSDATAATS
SPPSYSSITENAKNKYEKDKHEKEVGDKGNQVKKK
NT seq 5868 nt   +upstreamnt  +downstreamnt
atggcgcatatgtttactccgccaggaccgcaaagtctccgtaagttcacccgcgagtcc
cttaaggccatcgagagccggatcgcagaggagaatgccaagaagtccaagaacacggag
gagagaaataaagacaatgaatgtagcaggaaacccaacagcggtctggaggccgggaaa
actctgccgtttatatacggagaagttcccaaaggactggtgtccacaccgctggaggac
ctggaccagttctacagcaaccacacaacttttatagtagtgagcaaaaaaaaggaaatc
taccgtttcaacgccactcctgccttgtacatcttcagttccttcaaccttctgaggaga
atatcaattcagattttggtacattttttgttcaattttattataatctgcactattctg
gcgaactgtgcgttcatggtctacacacaaaccccggactgggccaagaatgtagaatat
gtcttcactgggatatacactttagaagcactggtcaagatcaccgccaggggattctgt
gtgggacgctttacttttctcagagatccgtggaattggttggattttattgttatagtc
atggcatatgtaacagagtttgtggatttggggagcgtgtccgccctgcgagcattcaga
gttcttcgagccctgaaaactatatcagtcgtcccagggctgaaaaccatcgttggtgct
ctgatccagtcagtgaagaagctctcagatgtcatgatcttgacccttttttgcctgagt
gtttttgcattggtgggactccagctctttatgggaattctaaagcagaaatgtgtgtat
tcgacatcttttactgaaaacaaggaagcatgttacaagaacaaaacatgcagggattac
attaacaatccaagtaatcaatatttcctaccaggaaaaaaagatgcactgatctgtgga
aattcttctgatgctgggcagtgtccagagggatatacgtgtttaaaagcaggtaaaaat
ccagattatggttacacaagctttgattcgttcggctgggctttcctttccttgttcaga
ctgatgactcaagacttctgggagaatctttaccaacagactcttcgggccgctgggaaa
acctatatgatttttttcgtgctggtcattttcttgggatccttctacctggtgaacctc
atcctggctgtagtcgccatggcatacgacgaacagaatcaagccacgatcgacgaggct
ttgaaaaaagaggaagagttcaacgccatgcttgagcagatcacgagacaggagcaggaa
gctgaggctgcagccgaacagtccaagtgtgagggtctcagtggagaaaagacggacagt
tcctcggacgcctccaaactcagctccaaaagtgccaaagagcgacgcaaccgcaagaaa
aagagacaacaccagggggaaagcgagaaagaggaggattccataaaagagggaaatgac
agaaagcccaacttcacttttgcagtggatggaaagatccggcgatcacgggacagatca
tacacgtctccacgtcagtcccccttgagttttcagggttccctcctcactcctcgtcgg
gacagcaaagcgagcgtcttcagtttccgtggacgaattcattcagataacaactacgcc
gacgacgagcagagcatgtttgaggagacgggcagccgaagagactctctgtttcttccc
actcgacccgagcgtcttttcagcaacgttagcaaaagcagtctgactccgcacttactg
ctgccttctaacgggaaagcacgctacgtggatgacagcaacgggatggtgatggtgaca
agtggagcatctgcaccaaactcccctgtcatagccctgaatacaccagaagtttcccga
aaaagagccatgtttgacgacacttgtgcagactcagatgacgaacgcagaagcagatgt
aattcacagaacttttcgaaggcttatcggcagtctatgagagagagagctttgagtgta
gcaagtggcagcaacaaccctgctgaatgttcagagatctttaaacagaggtgtgaggag
tggtggttcgagtttgcggagaattatttgatctgggattgcagtcccacatggctgagg
ataaaggaggtcgtccacatgattgtgatggacccgtttgcggatctgtttatcaccatc
tgcattgtgataaacacagtattcatggccatggagtgttaccctatggatggaccatac
tctagtatgctttcgactgctaatgtggttttcattggcatcttcacagcagagatgata
ttcaaggtcattgcgttggacccgtacagttattttctggaaggctggaatatcttcgac
agcatcattgtcactttgagtctgatggaactttgtctggcaaatgttttgtctggaatt
ggatttctaagaccatttcgactgcttagggtctttaaactagcgaagtcgtggccaacg
ctgaacatgcttatcaagatcatcgggaactctttgggcgctctcagcaacctgacgctg
gttctggccatcatcgtcttcatctttgctgtggtgggcatgcagctgttcggaaaaagc
tacggcgagtgtgtgtgcaagatctcatccgactgcatgcttcctcgctggcacatgaac
gacttcttccactcgttcctgatcgttttcagggtcctctgcggagagtggatcgagacc
atgtgggactgcatggaggtggcaggacagcctttgtgcttaactgtgtttatgatggtc
atggtgatcggaaatctggtggttctgaatctgttcctggctctactgcttagctccttc
agtgccgacaatctggcggtcagtggtgaagaagacgaaaacaacctgcagatcgctgtc
cgtcgaatcaggaaaggcttcactttcatcaaaacctgccttcagagtttcttcaggagt
ggctgtttacggaagaagaagcagaagtctgcagatggcaacatgatcgtgaactgcaag
gaaaggaaagatagcacaaaccacactacaatagagctggttaaaagcactggaggaacc
gatctggatagcgacaccgagaattttatcagcaacccgagcttgactgttagtgtcccg
attgccgcagaggagtctgattttgagtgtctgaacacagaggatttcagcagcctttct
tcagacctagaggaggataaagagaaactgtctgacgtggcgtccagcttctcagaggga
agcacagtcgacctcagaccactcggcaaagatggagaagacgccctggagttggtactc
gaggaagaagcatatcctgaaccctgtttcacagcagggtgtgtccggaggtttcgatgt
tgtcaggtggacgaagaaaagggcatatggaagaaatggtggctgctgagacagacctgc
tataacatagtggagcacagctggttcgagaccttcatcgtcttcatgatcctgctgagc
agtggtgctctggcttttgaggacatttatctggacacaaggaagagcgttaagaccata
ctggagtttgctgataaagttttcacctacatcttcattcttgagatgctgctaaaatgg
gtcgcatatggattcgccaaatacttcaccaatctgtggtgctggctggattttgtcatt
gttgatgtctcgctgatcagcctggtggccaacgccctcaactattcagagctgagtgcc
atcaaatccctgcgaacactcagagccttccggccgcttcgggctctctcacgctttgat
ggaatgagggtggttgtgaacgctcttctgggcgccattccctccatcatgaacgtcctg
ctcgtctgcctcatcttctggctcattttcagcattgtgggtgtcaacttcttcgctggg
aagttttctgaatgtataaacataaccacggagcagcgcctgcctgtctcagaggtctat
aacaagacagactgtgaaagaatggggaaaggagtccgctggagaaatgtgatcattaac
tttgacaatgttgggaatggatacctggccctgctgcaagtggcaacatttaaagggtgg
atgcctattatgtatgcagcggtagactctcgcaatccagaagaacagccggagtatgag
gtgaatctgtacatgtacctctattttgtcatcttcatcatccttggagccttcttcaca
ttaaacctcttcattggcgtcatcattgacaacttcaatcagcagaagaaaaagtttggg
ggtcaggatattttcatgacagaagaacagaagaaatattacaacgccatgaagaaacta
ggctcaaagaaaccccaaaaacccattccaagaccaaaaaacaagattcaaggactcatc
tttgacctcgtaaccaaacaggcctttgacattttcattatggtcctgatctggctcaac
atggtcactatgatgctggagacggaggatcagtcgattgaaatgacccgtgcgctgtac
tggatcaatgtcattttcattgtgctcttcaccaccgaatgcgtcctgaagatgatcgct
ctgcgccattacttcttcaccgttggctggaatgtgtttgactttatcgtggtcatcctg
tctatagttggcatgtctctaacagaagtcatcaagaagtacttcgtctcgcccaccttg
tttcgtgttattcgcctggcccggatcggccgcgtcctacgcctcattcgaagcgccaaa
ggcatacggacccttctgttcgcgttgatgatgtcccttcctgcccttttcaacatcggc
ctccttctgttcctcgtgatgttcatctacgccatcttcggcatgtccaactttgcctac
gtcaaaaaaacggccggcatcgacgacatgttcaacttcgaaacctttcccaacagcatg
ctctgtttgtttcagataaccacatcggggggctgggacggcctgttagcgcctatgcta
aacagcaaacctccagactgtgatccgacgaaaaacttcactggaagttcggtcgtaggc
gactgcgggaatccgtccatcggcattttcttcttcgtaagctacatcatcatatgcttt
ctcattgtagtaaacatgtacatcgctgttatcctggagaactttagcgtagccactgaa
gagagtgccgaaccgttgagcgaagacgatttcgacaggttttatgaagtttgggagaaa
ttcgaccccaaagcgacgcaattcatggaatacggtaagttgtcagacttcgccgattct
ctagatcctcctttgcggataccaaaacccaaccggtttcagctgatgtctatggatttg
ccaatggtgactggagatcgaatccattgtttggatattttattcgccttcaccaaacgc
gttctcggggaaggtggtgagatggatatgcttcatggacaaatggaggaccgattcatg
caatccaacccgtcgaaatcttcttacgagcccattacgacaacattgcgcagaaaacac
gaagatatgtctgctgcggtcatccagagagccttcaggaagcacttagtccgagatagc
atgaagaaagttcgcaatttcaagaaaaaaaacaagcatcagaatgggaaagtgccgagt
aatcagtcgatggataaagatatgtgcaatgaagactcggacgcaacggcagcaacgtcc
tctccgccgtcctacagtagtatcacggagaacgccaaaaataaatacgagaaggacaag
catgagaaggaagtgggcgacaaaggtaatcaagtgaagaagaagtag

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