KEGG   Danio rerio (zebrafish): 393173
Entry
393173            CDS       T01004                                 
Symbol
rpap3
Name
(RefSeq) RNA polymerase II-associated protein 3
  KO
K23002  RNA polymerase II-associated protein 3
Organism
dre  Danio rerio (zebrafish)
Brite
KEGG Orthology (KO) [BR:dre00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:dre03021]
    393173 (rpap3)
Transcription machinery [BR:dre03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Others
     393173 (rpap3)
SSDB
Motif
Pfam: TPR_1 RPAP3_C TPR_2 TPR_11 TPR_8 TPR_19 TPR_16 TPR_14 TPR_12 TPR_9 ANAPC3
Other DBs
NCBI-GeneID: 393173
NCBI-ProteinID: NP_956498
ZFIN: ZDB-GENE-040426-928
Ensembl: ENSDARG00000087962
UniProt: F1R498
Position
4:966061..983242
AA seq 595 aa
MSGNKALELQIQMRHNAEDLQSFMRDLDSWEDEIKQKDQQLRSENTGDTQKTLPPVRNKD
YKKTKKRAKRQTNSLKEQKETQRIKSYDYQTWDKFDVEKALESMDAEESPVQSNESDSEC
VNVDRDLALAEKEKGNQFFKDGRFDSAIECYTKAMDADPYNPVPPTNRATCFYRLKKFAV
AESDCNLAIALDSKYVKAYIRRAATRTALQKHREALEDYEMVLKLDPGNSEAQTEVQKLQ
QELNSSKQTEETEEKRESITEPTAEQQQRLQEQQRKQEAVMHKDRGNAYFKEGRYEVAVE
SYTRGMEADETNALLPANRAMAFLKLNRFAEAEQDCSAALALDPSYTKAFARRATARAAL
GKCRDARDDFEQVLKLEPGNKQAISEIEKLTAEMRSSLAPQEDTLRKTVQPIHKPEHLRS
TKPLRRMEIEEVGGAIAQTPLTSSPHHKIQKMEEKPDASCPAVARSAEDEVIPPPPCTSF
QLEADLRKISHNPQSTYSYLKQISPDSYPKIFQNSLESDVLNRILQTFHRCHTRPEEASL
LLDVLRNLASVKRFDMAVMFMSNTEKKMVQELFERIHNAGLTDSTVQDLQKKYGL
NT seq 1788 nt   +upstreamnt  +downstreamnt
atgtctggaaataaagcgctggagctgcagattcagatgcgacacaacgctgaagatctg
cagagctttatgagggatctggacagctgggaggacgagatcaagcagaaagaccagcag
cttcgctctgaaaacactggcgatacgcagaaaacacttccacctgtgagaaacaaagac
tataagaagacgaagaagagggcgaagcggcaaactaacagcctgaaggagcaaaaagag
acgcagcggataaaatcctacgattatcagacctgggataaatttgatgtggaaaaggct
ctggagtccatggatgcggaggaaagcccggttcagtccaatgaatctgactctgaatgt
gttaacgtggaccgagatctggcgctcgctgagaaagaaaaggggaatcagttcttcaag
gatggccggtttgacagcgccatcgagtgttacaccaaagcgatggatgcggatccgtat
aatcccgttcctccaacaaacagagccacctgcttctacagactcaagaagtttgctgtg
gccgagtctgactgcaatttagccatcgctctggacagtaaatatgtgaaggcgtacatc
aggagagcagcgacgcgcacggctttacagaaacatcgggaagctctcgaagattatgaa
atggttctcaaactggatcctggaaactcagaggctcagactgaagtgcagaagctgcag
caggagctgaactccagcaaacagacagaagagacagaagagaaaagagaaagcatcacg
gagccgacggcggaacaacagcagcgtctgcaggaacagcagaggaaacaggaagctgtc
atgcacaaggaccgaggaaatgcgtactttaaagagggccggtacgaggtggcggtggag
agctacactagaggaatggaggcggacgagacgaatgcactactgcctgctaacagagcc
atggccttcctcaaactcaacaggtttgcggaggcggagcaggactgcagtgcggctctc
gctctcgacccctcatacactaaagcgttcgccagacgagccacagccagagccgctctg
gggaagtgcagggacgccagagacgattttgagcaggttctgaagctcgagccgggaaac
aaacaagccataagtgagatcgagaagctcacagcggagatgcgcagcagtctggctcca
caggaggacacactgagaaagaccgtccagcccatacacaagcctgagcacctcagatcc
accaaacccttgaggcgaatggagattgaagaggttggaggagcgatcgctcagactccg
ctcacgtcttcacctcatcataagatccagaagatggaggagaagccagacgccagctgt
cctgctgtggccaggtctgctgaggacgaggtcattcctcctccaccctgcaccagtttc
cagctagaggccgacctgaggaagatcagccataacccacagtccacatacagctatctg
aagcaaatcagtccagactcgtatccaaagatcttccagaactctctggagtccgacgtg
ctgaaccgcatcctgcagaccttccaccgctgccacacacgacctgaggaagcgtctctt
ctgctggacgtcctgagaaacctggcgagcgtgaagagattcgacatggccgtcatgttt
atgtcaaacacggagaagaaaatggtgcaggagctgtttgaacggattcacaatgccggt
ctgacagactccacagttcaagacttacagaagaaatacggcctctga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (59)   
   KEGG ORTHOLOGY (1)   
   RefGene (53)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   ZFIN (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (3)   
   RefSeq(nuc) (1)   
   GenBank (1)   
   EMBL (1)   
Protein domain (11)   
   Pfam (11)   
All databases (78)   

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