KEGG   Danio rerio (zebrafish): 393632
Entry
393632            CDS       T01004                                 
Symbol
mlh1
Name
(RefSeq) DNA mismatch repair protein Mlh1
  KO
K08734  DNA mismatch repair protein MLH1
Organism
dre  Danio rerio (zebrafish)
Pathway
dre03430  Mismatch repair
dre03460  Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:dre00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03430 Mismatch repair
    393632 (mlh1)
   03460 Fanconi anemia pathway
    393632 (mlh1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:dre03400]
    393632 (mlh1)
DNA repair and recombination proteins [BR:dre03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    MutL homologs
     393632 (mlh1)
SSDB
Motif
Pfam: Mlh1_C DNA_mis_repair HATPase_c_3 HATPase_c
Other DBs
NCBI-GeneID: 393632
NCBI-ProteinID: NP_956953
ZFIN: ZDB-GENE-040426-1600
Ensembl: ENSDARG00000025948
UniProt: Q6PFL1
Position
13:42602379..42617644
AA seq 724 aa
MAGVIRRLDETVVNRIAAGEIIQRPANAIKEMMENCLDAKSTNIQITVKEGGLKLILIQD
NGTGIRKDDMEIVCERFTTSKLKSFDDLSSIATYGFRGEALASISHVAHVTITTKTADAK
CAYRANYCDGKLKSPPKPCAGNQGTLISVEDLFYNVSTRRKALKSPSEEYSRIVEVVSRY
AIHNSGKSFSVKKQGEMVADVKTLPNASVLDNIRVVFGVAVSRELIEVECEDQKFAFKVK
GYISNANYSVKKCILILFINHRLVESSALKKAIETVYTAYLPKNTHPFLYLSLEIAPQNI
DVNVHPTKHEVHFLHEDSIIESIQKHIENKLLGSNSSRTYFTQTLLPGLSASASVAKASS
SSADPQERVYAHQMVRTDSKAQKLDAFLQPSASSSSSAAQRKTEKTSSTSTAVQDSVELD
DAELLTAADVEPCGGEDPQTDAQPPGDEAPPRKRPHVEEVKEDLTAASLPRRRIVKLTSI
KGLRDQIELQTHKGLQELLQNHSFVGSVSPQWTLVQHQTKLYLLNTTKLSQELFYQILIY
DFGNFGVLRLSNPAPLYDLAMLALDSEESGWTEEDGPKEGLAQYIVDFLKQKAEMLEEYF
SLEIDAEGNLTGLPMLLDNYTPAMEGLPMFILRLATEVNWDKEKECFREFSVECSHFYSI
RKSYTLEADADEPQDAEMSWQWKVEHVLFKALRSLFSPAKHLSEDGSVLQIASLPDLYKV
FERC
NT seq 2175 nt   +upstreamnt  +downstreamnt
atggcgggagtcatccgcagactcgacgagactgtagtgaaccgcatcgcagccggagag
attatccagcggcctgccaatgctatcaaagagatgatggagaactgtttggatgcaaag
tctacgaacatccagataacagtgaaagagggcggactgaaactcatccttattcaggac
aatggcactggaattagaaaagatgatatggaaatagtctgtgagcgttttacgaccagc
aagctgaagtcttttgacgatttgtcatccatcgcaacatacggattcagaggagaagcc
ctcgccagtataagtcatgtagctcacgtcaccatcaccacaaaaacagcagatgctaaa
tgtgcttacagggccaattactgtgatgggaaactaaaatctccacccaaaccctgtgct
ggaaaccaggggacactgatttctgtagaggatctgttttataatgtgtctacgcgacgg
aaagccctaaagagccccagtgaggaatattccagaatcgtcgaggttgtgagcagatac
gccattcacaactctgggaaaagtttttctgtcaagaagcaaggtgagatggttgcagat
gtgaagactctcccaaacgcctctgtgctggacaacatccgtgtggtgtttggagtcgca
gttagcagggagctgattgaagttgaatgcgaggatcagaaatttgcttttaaagtgaag
ggctacatctccaatgctaactactctgtcaagaaatgcatccttatcctttttatcaat
catcgattggtggagtctagtgccttgaagaaagcaattgagaccgtctacaccgcttat
cttcccaaaaacactcatccttttctttatctcagtttagagattgctcctcaaaacatt
gatgtaaacgttcacccgacaaaacatgaggtgcacttcctgcacgaggactccatcatc
gagagcattcagaagcacatcgagaataaacttctcggctccaattcctctcgcacgtac
ttcacacagactctacttccgggactttcagcatctgcaagcgtggcgaaagcttctagt
tcctcagcagatccccaggagcgagtttacgcccatcagatggtccgcactgacagtaaa
gcccagaagcttgatgcatttctccagccatcagcctcatcttcatcatctgctgctcaa
agaaagacagaaaaaacctccagcacgtcaactgctgtacaagactcggtggagctggac
gacgcagagctgctgacagctgctgatgtggagccgtgtgggggagaggatccccagact
gatgctcaacctcctggtgatgaagcaccaccaaggaaaaggcctcatgttgaggaggtg
aaggaggatttgacagctgcttctcttcccaggagacgaatcgttaaactgaccagcata
aaggggcttcgggaccagattgagctgcaaactcacaaaggtttacaggagctgctgcag
aatcactcatttgtaggttcagtcagtcctcagtggactttggtgcagcaccagaccaaa
ctctacctgctcaatacaaccaaactcagtcaggagctgttttatcaaatcttgatctac
gactttggtaacttcggcgttcttcgattgtcgaatccagctccgctctatgatctggcc
atgttggctctggattcagaggaaagtggatggacagaggaggatggtccgaaagaagga
ctggcccagtatattgtggatttccttaagcagaaagcagaaatgctggaagaatacttt
tccttggaaatagatgcagagggaaacctgacaggtctgccaatgctgttggataattac
actcctgccatggagggactgccaatgttcattttgcgtttagccactgaggtgaactgg
gataaagaaaaggagtgtttccgtgaattcagtgttgaatgcagtcatttctactccata
aggaaaagctacacactggaggcagacgcagacgagccacaggatgctgagatgagctgg
cagtggaaggtggagcatgtgcttttcaaagctttgcgctctctcttcagtcctgccaaa
cacttgagtgaagacggcagtgtcctgcagatcgccagcctgcctgacctctacaaagtg
tttgaaagatgctga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (34)   
   KEGG ORTHOLOGY (1)   
   RefGene (28)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   ZFIN (1)   
Protein sequence (3)   
   UniProt (1)   
   RefSeq(pep) (2)   
DNA sequence (5)   
   RefSeq(nuc) (3)   
   GenBank (1)   
   EMBL (1)   
Protein domain (4)   
   Pfam (4)   
All databases (51)   

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