KEGG   Danio rerio (zebrafish): 553367
Entry
553367            CDS       T01004                                 
Symbol
gpc1a
Name
(RefSeq) glypican-1 precursor
  KO
K08107  glypican 1
Organism
dre  Danio rerio (zebrafish)
Brite
KEGG Orthology (KO) [BR:dre00001]
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   00535 Proteoglycans [BR:dre00535]
    553367 (gpc1a)
   00537 Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:dre00537]
    553367 (gpc1a)
Proteoglycans [BR:dre00535]
 Cell surface proteoglycans
  Glypican family (GPI-anchored HSPG)
   553367 (gpc1a)
Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:dre00537]
 Others
  553367 (gpc1a)
SSDB
Motif
Pfam: Glypican Fz
Other DBs
NCBI-GeneID: 553367
NCBI-ProteinID: NP_001032450
ZFIN: ZDB-GENE-051120-147
Ensembl: ENSDARG00000019341
UniProt: F1QCC6
Position
22:15506849..15549342
AA seq 554 aa
MDLTAVALLVSLVSVSLSAENAGGKARSCTDVRQFYSGKGFTLNGVPQSEISGEHLRICP
QGYTCCTSAMEETLSNLSRREFEGLVREAGRSIQALLNAQYRTFDTYFLELLNGSERWLE
EAFVAALGELYRLNAGVFRDLYAELHRYYSGASLNLEEALDEFWMKLLERLLKASDPETA
SLLSDDFLDCASKQTETLRPFGDAPRELKAKLVRAFIAARAFVQGLNAAGEIVRKVSQVP
LSPECNRAIMKLVYCPHCRGLGSVKPCINYCKNVMKGCLANQADLDTEWQSLIETMLQVA
SSFGAEPSMDTVIYSIPVRISEAVLAMQENMEIYTSKVFKACGDRGEEGTPSSISEEPKK
KERTVTALEYKPSPKSAARLEVQVTDVYSKLKEMQLYWIQLPSALCSGKTASSTTGDKCW
NGITKASYLPEVMGDGLANQINNPEVEIDITKPDRTIRQQIMLLKIMSNRLKNALEGNDV
DFQDTSDDFSGSGSGMCADHLCVRGRPPVFGPKTDRPKLYATGPENKRVKGSGNQIQPSF
ILLIVFFVSLLLRR
NT seq 1665 nt   +upstreamnt  +downstreamnt
atggatctgacagcggtcgcgctgctcgtgtcgctcgtgtccgtgtctctgtccgcggag
aacgcgggtggtaaagcgcggagctgcacggacgtgcgccagttctacagcggcaaaggc
ttcacgttaaacggcgtcccgcagtcggagatctcaggagagcatctccgcatctgcccg
caaggttacacctgctgcaccagtgccatggaggaaacgctgtcgaacctgagccgcaga
gaatttgaaggcctggtcagagaagcaggacgatccattcaagctttgctcaatgctcag
tacagaacctttgacacatatttcctggaactcctgaatggctctgaacggtggttagag
gaggcttttgtggctgcacttggagaactgtatcgactgaatgcaggagtgtttcgtgac
ctctatgccgaactgcatcgatattacagtggtgcttccctgaatctcgaggaggccttg
gatgagttctggatgaagctcctggagcgacttctgaaggcgtctgaccctgaaactgcc
tccctgctctctgatgacttccttgattgtgcctccaagcagaccgagaccctgcgtcct
tttggagatgctccacgggaactaaaggccaagctggtgcgggcattcattgcggctcgg
gcatttgtccagggccttaacgcagctggagagattgtacggaaggtgtctcaggtccca
ctgagcccagagtgcaatcgtgccattatgaaactggtgtactgccctcattgcagaggt
ctgggatcagtcaaaccttgcatcaactactgcaaaaatgtgatgaagggctgcctggct
aatcaggctgacctggacactgagtggcagagcctcatagaaaccatgctacaggtggcc
tccagttttggtgccgagcccagtatggacacggtgatctattcaattcctgtgagaatc
tctgaagctgtcctcgccatgcaggagaacatggagatctataccagcaaggtttttaag
gcctgtggggaccgtggtgaggaaggcacaccaagttcaatatctgaggagccaaaaaag
aaagaacgcacagtgactgctctggaatacaaacccagccctaagtctgcagccagactg
gaggtccaggtcacggatgtgtacagcaaactcaaggaaatgcagctttactggatccaa
cttccttcggctttgtgcagtggtaaaacggcatcttcaaccactggtgacaaatgctgg
aatggcatcaccaaagccagttacctcccagaggtcatgggtgatgggctggccaatcag
attaataacccagaggtggagatcgacatcactaagcctgacaggactatacgtcaacag
atcatgctgctgaagatcatgtctaaccgcctgaaaaacgccctcgaaggcaatgatgtg
gatttccaagatacaagtgatgatttcagtggctcgggaagcggcatgtgtgcggatcac
ctgtgtgttcgtggtcgacctccggtttttgggccgaaaacggacaggcccaaactctat
gccactgggcctgaaaacaaaagagtcaaaggatccgggaaccagattcagccttctttc
attttactgattgtgttctttgtgagtctattgctcagacgataa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (7)   
   KEGG ORTHOLOGY (1)   
   RefGene (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   ZFIN (1)   
Protein sequence (3)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (1)   
DNA sequence (7)   
   RefSeq(nuc) (1)   
   GenBank (3)   
   EMBL (3)   
Protein domain (2)   
   Pfam (2)   
All databases (23)   

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