KEGG   Danio rerio (zebrafish): 553550
Entry
553550            CDS       T01004                                 
Symbol
tsen54
Name
(RefSeq) tRNA-splicing endonuclease subunit Sen54
  KO
K15326  tRNA-splicing endonuclease subunit Sen54
Organism
dre  Danio rerio (zebrafish)
Brite
KEGG Orthology (KO) [BR:dre00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:dre03016]
    553550 (tsen54)
Transfer RNA biogenesis [BR:dre03016]
 Eukaryotic type
  tRNA spricing factors
   tRNA splicing endonuclease complex
    553550 (tsen54)
SSDB
Motif
Pfam: tRNA_int_end_N2 tRNA_int_endo_N OCIA
Other DBs
NCBI-GeneID: 553550
NCBI-ProteinID: NP_001018365
ZFIN: ZDB-GENE-050522-454
Ensembl: ENSDARG00000036844
UniProt: Q504E6
Position
3:60761770..60796503
AA seq 397 aa
MGFSERGKQYLQPEEALYLMECGNVQVFYRDLPLSIQDGYERFLSSDTVTLHQYQVFGHL
KRLGYVVNRFDPSSVSSTYERQLNLPASDKQKKQLKRKRSQSPVSSDKHGISTEEKTTSE
AHNELAETSKLPADLQEPVHLADAPERTWWMEEDVQQKHPKTQTAAPRWDFSSISFPDLG
SRRRSERLASPHRSLLPENVDVGECDVSRWLGRLNMKQEKLSRRDMERQRERDRYRWDVN
SDREVRRCRNWAEYSELMGERRRRRRKHRPEHLWEREETPLTQPGQCTSHRELLDQIGII
KSSTFSEGLSRLSPSDQWKISFDVYQPDTVAEFKKSHPGKPYTRMCVCSFAGPVPDLHAV
KQLSFQSQDVPVTFAVVDHGDISFYCFKDFKLPTDVY
NT seq 1194 nt   +upstreamnt  +downstreamnt
atgggtttttcagaaagaggcaagcagtatctgcaacccgaagaggcgctctacctcatg
gaatgtggcaatgtgcaggtgttttaccgggaccttcctctgtccattcaggacggatat
gagcggtttctgtcctctgacactgtgactcttcatcagtatcaggtttttggacatttg
aaaaggcttgggtatgttgtgaacagatttgatcccagctcagtctcatccacatatgag
agacagctgaatctgccagcatcggacaaacagaagaaacagctgaagaggaaacgctct
caaagtcctgtgtccagtgataaacacggcatatcaacagaggagaagacgacatctgaa
gctcacaatgagctagcggagaccagtaaactaccagcagatctgcaggagccggtacat
ttagctgacgcacctgagaggacatggtggatggaggaggacgtccagcaaaaacaccca
aaaacccaaactgcagctccccgttgggacttcagcagcattagtttcccagatctgggc
tcccgcaggagatctgagcgtttggcgtctccacaccgcagcctgctgccggaaaatgta
gatgtgggtgaatgtgacgtgtcccgctggctgggcagactcaacatgaagcaggagaag
ctgtcgcggcgggacatggagcgacagagggagcgggacagataccgctgggatgttaac
agtgacagggaggtgcggcgctgcaggaactgggcagaatattcagagctgatgggggaa
cggaggaggcggaggagaaaacacagacctgaacacctgtgggagagagaggagacgccg
ctcactcagcccggacagtgcacatcacaccgtgaactgctggaccagatcggcatcatc
aagtcctctactttctctgagggtctttccagattgtccccgtcagaccagtggaagatt
agtttcgatgtttaccaaccagacacggtggcggagtttaaaaagagccaccctggaaag
ccttacacacgcatgtgtgtctgcagttttgcgggccctgtgccggatctgcatgcagtg
aagcagctctccttccagagccaggacgtcccggtgacattcgcagtggtggatcacggt
gacatctccttttactgcttcaaagactttaaacttccaactgatgtgtattaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (25)   
   KEGG ORTHOLOGY (1)   
   RefGene (19)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   ZFIN (1)   
Protein sequence (6)   
   UniProt (1)   
   RefSeq(pep) (5)   
DNA sequence (7)   
   RefSeq(nuc) (5)   
   GenBank (1)   
   EMBL (1)   
Protein domain (3)   
   Pfam (3)   
All databases (44)   

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