KEGG   Danio rerio (zebrafish): 555688
Entry
555688            CDS       T01004                                 
Symbol
pcdh19
Name
(RefSeq) protocadherin-19 precursor
  KO
K16499  protocadherin delta 2
Organism
dre  Danio rerio (zebrafish)
Brite
KEGG Orthology (KO) [BR:dre00001]
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04515 Cell adhesion molecules [BR:dre04515]
    555688 (pcdh19)
Cell adhesion molecules [BR:dre04515]
 Cadherins
  Protocadherins
   555688 (pcdh19)
SSDB
Motif
Pfam: Cadherin Cadherin_2 Cadherin_3 Cadherin_C_2
Other DBs
NCBI-GeneID: 555688
NCBI-ProteinID: NP_001120991
ZFIN: ZDB-GENE-030131-4218
Ensembl: ENSDARG00000034344
UniProt: A1L1W7 A0A9U5BCE3
Position
14:complement(40303153..40390779)
AA seq 1088 aa
MHSKDMDFVQMFVCFLLCWTGVDAVFNLKYTVEEELRAGTKIANVTADAKVAGFALGNRQ
PYLRVISNSEPRWVNLSPAGLLITKQKIDRDAVCRQTPKCFISLEVMSNSMEICVIKIEI
IDVNDNAPRFPTNHIDIEISENAAPGTRFPLEGASDPDSGSNGIQTYTITPNDIFGLEIK
TRGDGSKIAELVVEKTLDRETQSRYTFELTAEDGGDPPKSGTVQLNIKVIDSNDNNPVFD
EPVYTVNVLENSPINTLVIDLNATDPDEGTNGEVVYSFINFVSNLTKQMFKIDPKTGVIT
VNGVLDHEELHIHEIDVQAKDLGPNSIPAHCKVIVNVIDINDNAPEIKLLSENSEMVEVS
ENAPLGYVIALVRVSDNDSGANGKVQCRLQGNVPFRLNEFESFSTLLVDGRLDREQRDMY
NLTILAEDSGYPPLRSSKSFAVKVTDENDNPPYFTKPHYQAMVLENNVPGAFLLAVSARD
PDLGMNGTVSYEIIKSEVRGMSVESYVTVNSNGEIYGVRAFNHEDTRTFEFKVSAKDGGD
PPLTSNATVRIVVLDVNDNTPVMTTPPLVNGTAEVSIPKNAGVGYLVTQIKADDYDEGEN
GRLTYSISEGDMAYFEIDQINGEVRTTKTFGENAKPSYQITVVAHDHGQTSLSASAYIVI
YLSPDLNAQEQIGPVNLSLIFIIALGSIAVILFVTMIFVAVKCKRDNKEIRTYNCRVAEY
SYGNQKKSSKKKKLSKNDIRLVPRDVEETDKMNVVSCSSLTSSLNYFDYHQQTLPLGCRR
SESTFLNVENQNSRNAAPNHGYHHTFTGQGPQQPDLIINGMPLPETENYSIDSSYVNSRA
HLIKSTSTFKDMEGNSLKDSGHEESDQTDSEHDVQRGHYADTAVNDVLNMTVPSNNSQIP
DQDQSEGFHCQDECRILGHSDRCWMPRVPIPARAKSPEHGRNVIALSIEATTVDVPHYED
CGTTKRTFATFGKDGPDEDRAEQRGRRQTAEPAVCSPKTNGAVREAGNGREAVSPITSPV
HLKSPQSKAPSTYNTLKCRDAERIANHSLLRQPEGKDSEPAMREINTLLQDGRDKESPGS
KRLKDIVL
NT seq 3267 nt   +upstreamnt  +downstreamnt
atgcattccaaggacatggatttcgtacaaatgtttgtgtgctttctcttgtgctggact
ggagtcgatgccgtgttcaatttgaaatacaccgtggaggaagagctgcgtgcaggcaca
aagatagccaacgtaacggcggacgcaaaagttgcgggttttgcacttggaaaccgacag
ccttatttgcgggttatctccaattccgagccgcgatgggttaatctgagccctgccgga
ctgctcatcaccaagcaaaaaattgatcgggacgctgtttgccgacagacacctaagtgt
tttatttcgttagaggtgatgtcgaactcgatggagatctgcgtgatcaaaattgagatt
atcgacgtaaacgacaacgcgccccgcttccccaccaaccacattgacatagaaatctcg
gaaaatgccgctcccggtaccagatttcccctagagggggcaagcgatccggactcgggg
agcaacggcattcaaacgtacaccatcaccccgaatgatattttcggtcttgagattaag
acgaggggagacggctccaaaatcgcagaacttgtcgtggaaaagactttagacagagaa
acgcagtctcggtacacgtttgaactcacggcggaggacggaggagaccctccgaagtct
gggactgtgcaacttaacatcaaagtcatcgactccaacgacaacaaccccgttttcgat
gagccagtgtacactgtaaacgtgctggagaattctcccattaacacgttagtcatagac
ctgaacgccactgacccagacgaaggaaccaatggcgaggtggtctactcattcataaac
tttgtctccaacctgaccaaacagatgtttaaaatcgaccccaaaacaggtgtaatcaca
gtgaacggcgttttggaccacgaggaactgcacattcacgaaattgacgtacaagccaaa
gatctgggtccaaattcaatccctgcccactgcaaagtgattgttaacgtaatcgacata
aacgacaacgcgcccgaaatcaaactgttgtcggagaacagcgagatggtagaggtgagc
gaaaacgctcctctcggatacgtgatagcactggtgcgagtctcagacaacgattccgga
gcgaatgggaaagtgcagtgcagactgcagggcaatgtgccttttagactcaatgagttc
gagagcttctccaccttacttgttgacggccgtctggatcgagagcagagagacatgtat
aatttgaccattctggccgaggacagcgggtatcccccgctcagaagctcgaaatcgttt
gcggtgaaagtaacagatgaaaacgacaatcccccgtacttcaccaagccccattatcaa
gccatggtgctcgaaaataacgtcccaggtgcgtttcttctggcggtgtccgccagagac
cctgatctgggcatgaacggcaccgtgtcgtacgaaatcatcaaatcggaggtgcggggc
atgtctgtggaatcctacgtgaccgtcaactcaaacggcgaaatatacggcgtcagggct
tttaatcacgaagatacgcggacatttgagtttaaagtgtctgcgaaggatgggggagat
ccacctttgaccagcaacgccaccgtgcgcatcgtcgtgctggatgtaaacgacaacaca
cctgtgatgaccaccccgcccctggtgaacggcaccgcggaggtgtccatccctaaaaac
gctggagttggttatttggttacacaaataaaagctgatgattacgatgagggtgaaaat
gggaggttaacatattcaatatcagaaggagacatggcatactttgaaatagaccagata
aacggcgaggtgcgaaccacaaagacgtttggggagaacgcgaagccatcctatcaaatc
accgtggtggcgcacgaccacggccaaacttctctgtctgcctctgcatatattgtcatt
tatctctcacctgatctcaatgcacaggaacaaatcggaccagtcaacctgtccctcatc
ttcatcattgccttgggctctattgcagtcattctgtttgtcacgatgatatttgtggct
gtcaagtgcaaaagggataacaaggaaatcagaacctacaactgcagggtggcggagtac
tcctacggcaaccagaagaagtccagcaagaagaagaagctgagcaagaatgacatccgg
ctggtgccgcgggacgtggaggagacggacaagatgaatgtggtgagttgctcgtctctc
acctcttcgctcaactacttcgactaccaccagcagactctgccgctgggctgcaggcgc
tccgagagcaccttcctcaacgtggagaaccagaactccaggaatgctgcacccaaccat
ggctaccaccacaccttcacagggcagggccctcagcagcctgacctcatcatcaacggc
atgccgctgcctgagacggagaattattccattgactccagttatgtaaacagcagagca
cacctaattaaaagcacgtcaacattcaaggacatggaaggaaacagtttgaaggacagc
gggcacgaagagagcgaccaaacagacagtgaacatgacgtccagagagggcactatgct
gatacagctgtcaacgacgtcctgaatatgaccgtaccctcaaacaactcacagatacct
gaccaagatcagtcggagggtttccactgccaagatgaatgccgtatcttgggccactcg
gaccgttgctggatgccccgggtaccgataccggcgagagctaagtctccagaacacgga
cgcaatgtcatcgccctgtccattgaggccaccacagtggacgtacctcactatgaggac
tgtggcaccaccaaaaggacttttgccacctttggcaaagacgggccggatgaggaccgg
gccgagcaaaggggcaggcggcaaacagcggagccagccgtctgcagccccaagaccaac
ggcgctgtgcgcgaggccggaaacggcagagaggccgtcagccccatcacctcccccgtg
cacctgaaaagcccccaatccaaagcaccttccacctacaacacactgaaatgccgtgac
gcagagcgcatagccaatcacagcctgctgcggcagccggaggggaaggacagtgagccg
gccatgcgggagatcaacacgctcctacaggacggccgtgataaagagtcccccggcagc
aagagactgaaggacatcgtgctttaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (18)   
   KEGG ORTHOLOGY (1)   
   RefGene (12)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   ZFIN (1)   
Protein sequence (6)   
   UniProt (2)   
   RefSeq(pep) (4)   
DNA sequence (14)   
   RefSeq(nuc) (4)   
   GenBank (5)   
   EMBL (5)   
Protein domain (4)   
   Pfam (4)   
All databases (45)   

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