KEGG   Danio rerio (zebrafish): 558578
Entry
558578            CDS       T01004                                 
Symbol
smek1
Name
(RefSeq) serine/threonine-protein phosphatase 4 regulatory subunit 3
  KO
K17491  protein phosphatase 4 regulatory subunit 3
Organism
dre  Danio rerio (zebrafish)
Brite
KEGG Orthology (KO) [BR:dre00001]
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01009 Protein phosphatases and associated proteins [BR:dre01009]
    558578 (smek1)
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:dre03400]
    558578 (smek1)
Protein phosphatases and associated proteins [BR:dre01009]
 Protein serine/threonine phosphatases
  Phosphoprotein phosphatases (PPPs)
   Protein phosphatase-4
    Regulatory subunits
     558578 (smek1)
DNA repair and recombination proteins [BR:dre03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    Protein phosphatase 4
     558578 (smek1)
SSDB
Motif
Pfam: PP4R3 WH1 Ran_BP1 TMEM164
Other DBs
NCBI-GeneID: 558578
NCBI-ProteinID: NP_001038274
ZFIN: ZDB-GENE-030131-3958
Ensembl: ENSDARG00000042187
UniProt: Q5SP90
Position
20:complement(33467161..33487741)
AA seq 818 aa
MTDTRRRVKVYTLNEDRQWDDRGTGHVSSAYVERLKGMSLLVRAESDGSLLLESKINPNT
AYQKQQDTLIVWSEAENYDLALSFQEKAGCDEIWEKICQVQGKDPSVDITQELIDESEEE
RFDDMSSPGLELPPCELSRLEEVAELVASSLPSPLRREKLALALENEGYIRKLLELFRVC
EDLENREGLHHLYDIIKGIFLLNRTALFEVMFSEECIMDVIGCLEFDPSLPQPRRHREFL
TTTARFKEVIPISDPELRQKIHQTYRVQYIQDMVLPTPSVFEENMLSTLHSFIFFNKVEI
VGMLQDDEKFLTELFAQLTDEATDDDKRHELVNFLKEFCAFSQTLQPQNRDAFFKTLSNM
GILQALEVILGMDDVQVRGAATDIFSYLVEYNPSMVREFVMQESQQNDDDILLINLIIEH
MICDTDPELGGAVQLMGLLRTLVDPENMLATANKTEKTEFLSFFYKHCMHVLSAPLLANT
TEEKPSKDDFQTCQLLALIVELLTFCVEHHTYHIKNYIINKDILRRVLVLTASQHAFLAL
CALRFMRKIIGLKDEFYNRYIMRNFLFEPVVKAFLNNGSRYNLINSAIIEMFEYVRVEDV
KSLTAHIIENYWKGLEDVDYVQTFKGLKLRYEQQRERQDNPKLDSMRSILRNHRFRRDAR
TLEDEEEMWFNTDEEDLEDGEAVVPPSDKMKNDEDLMDPISKFMERKKLKDSEEKEVLTG
KASLSGRQSPSFKLSFSSSPKASLSSPPTASLHPGSPGSPSSPGTGARSSPPSAAVTTKG
GLVGLVDYPDDDEEDEDEEDADSKEESPPLSKKSKLSS
NT seq 2457 nt   +upstreamnt  +downstreamnt
atgactgacactcgtagacgagtaaaagtgtacactctgaatgaggaccgccagtgggac
gatcggggaacgggacatgtgtcatccgcctacgtggagaggctcaaaggcatgtctctc
ctggtgcgcgccgaaagcgatgggtcactgctgctggagtccaaaatcaatcctaacacc
gcctatcaaaaacagcaggacacattaatagtttggtctgaggctgaaaactatgacctg
gccctcagcttccaggaaaaggctggttgtgatgagatctgggagaaaatatgtcaggtc
cagggaaaggacccatcggtagacatcacccaggagctgatagatgagtctgaggaggag
cgttttgatgacatgtcctctcctggtcttgaacttcctccatgtgaactctcccgattg
gaggaggtggccgagctggtggcgtcatccttgccttctccgctacggcgggaaaagctg
gccctggcgctggagaacgagggctacatccgcaagctgctggagcttttccgcgtctgc
gaggacttagaaaacagagaaggtctgcatcacctctatgacatcatcaaaggcattttc
ctactcaatcgcacggcgctctttgaagtcatgttctctgaagaatgcatcatggatgtg
attggctgtctggagtttgatccatcgctaccccaaccacggaggcatcgggagttcctg
accaccactgcacgctttaaagaggtcattcccatttcggacccagagctgcggcagaag
atccaccagacgtaccgggtgcagtatattcaggacatggtgctgcccactccatcggtc
tttgaagaaaacatgctttccaccctccactccttcatcttcttcaacaaagtggagatt
gttggcatgctgcaggatgatgagaagtttttgactgagctctttgcgcagctaactgat
gaagccacagatgacgacaaacggcacgaattggtaaacttcctgaaggagttttgtgcg
ttttcacaaacgttacaaccacagaacagagatgcgttctttaaaaccctttccaacatg
ggaatcctgcaagcgctggaagttattcttggcatggatgatgtgcaagtgcgtggagca
gccactgatatcttctcctacctggtggagtacaacccttctatggtgcgagagtttgtc
atgcaggagtcacagcagaatgatgatgacattctgttgataaatctgatcattgagcat
atgatctgtgacacggatcctgagttggggggagctgttcagcttatgggtttgctcagg
acgctagtggacccagagaacatgctagcaactgctaataaaactgagaagaccgagttt
ttgagcttcttctataagcattgcatgcatgtgctctccgctccacttcttgccaacacc
actgaagaaaaacccagcaaagatgatttccagacatgtcagctgctggctctgatcgta
gagctgctcactttctgcgtggagcatcacacgtatcacataaagaactacatcatcaac
aaagacatcctgcgcagagtgctggtgctcactgcatcacaacatgctttcctagcctta
tgtgctttgcgtttcatgagaaaaatcattggcctgaaggatgagttttataaccgatac
attatgaggaacttcctgtttgagccagtggtcaaagctttcctcaataatggatccaga
tacaacctcataaactcagccattatagagatgtttgagtatgtcagagtggaggatgtg
aagtcactgacggctcatatcatagagaactactggaagggcctggaggacgtagactat
gttcagacgtttaaaggactaaagctccgatatgaacagcagagagaaagacaggacaac
ccaaaacttgacagtatgcggtcgattctgagaaatcaccgttttcgccgggatgcacgg
acactggaagacgaggaggagatgtggtttaatacggatgaggaagacttagaggatggt
gaagcagttgtgcctccgtcggacaagatgaagaatgacgaggaccttatggatcccatc
agcaaatttatggagaggaaaaaattgaaagattcagaagagaaggaggtgttgacaggg
aaagcaagtctctcaggacggcaaagtcccagttttaaactgtccttctccagctcgcca
aaggcaagcctgtcctctccgccgactgcatcccttcatcccggttcacctggttctcct
agctctcccgggacaggggcccggagctctcccccttcggcagctgtcaccactaaggga
ggtttagtggggctggtggactatcctgatgatgacgaagaggacgaggatgaggaagat
gcagacagtaaagaagaaagtcctccgctgtccaagaagtccaagctgagctcctaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (13)   
   KEGG ORTHOLOGY (1)   
   RefGene (7)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   ZFIN (1)   
Protein sequence (3)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (1)   
DNA sequence (7)   
   RefSeq(nuc) (1)   
   GenBank (3)   
   EMBL (3)   
Protein domain (4)   
   Pfam (4)   
All databases (31)   

Download RDF
DBGET integrated database retrieval system