KEGG   Danio rerio (zebrafish): 559665
Entry
559665            CDS       T01004                                 
Symbol
smc1a
Name
(RefSeq) structural maintenance of chromosomes protein 1A
  KO
K06636  structural maintenance of chromosome 1
Organism
dre  Danio rerio (zebrafish)
Pathway
dre04110  Cell cycle
dre04114  Oocyte meiosis
Brite
KEGG Orthology (KO) [BR:dre00001]
 09140 Cellular Processes
  09143 Cell growth and death
   04110 Cell cycle
    559665 (smc1a)
   04114 Oocyte meiosis
    559665 (smc1a)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:dre03036]
    559665 (smc1a)
Chromosome and associated proteins [BR:dre03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   Cohesin complex
    559665 (smc1a)
  Meiosis-specific proteins
   Cohesin complex and associated proteins
    559665 (smc1a)
SSDB
Motif
Pfam: SMC_N SMC_hinge AAA_23 AAA_21 AAA_15 AAA_29 ABC_tran SlyX
Other DBs
NCBI-GeneID: 559665
NCBI-ProteinID: NP_001155103
ZFIN: ZDB-GENE-090506-9
Ensembl: ENSDARG00000055754
UniProt: E7F0X6
Position
23:28693282..28713982
AA seq 1232 aa
MGYLKLIEIENFKSYKGRQIIGPFHKFTAIIGPNGSGKSNLMDAISFVLAEKTSNLRVKT
LKDLIHGAPVGKPAANRAFVSMVYCEDNGEECTFTRAIIGSSSEYRINSKVVGLSDYSEE
LEKLGILIKARNFLVFQGAVESIAMKNPKERTALFEEISRSGELAQEYDRRKKEMVKAEE
DTQFSYHRKKNIAAERKEAKQEKEEAERYQRLKDEVVRAHVQLQLFKLYHNEEEIEKLNR
ELSQRNREIDKDRKKMDHVEEELKDKKKELGRMMRDQQNVEKEIKEKDAELNQKRPQYIK
AKENTAHKIKKLEVARKSLQNAQKMYKKRKADIEELDREQGAVEMSRQEFEERMEEEAQS
QGQDLTLEENQVKQYHRLKEEASKRAATLAQELEKFNRDQKADQDRLDLEERKKIETEAK
IKQKIREIEENQKRIEKLEDYIATSRQSLDEQRRMEEELTEEVELAKRRIDEINMELNQV
MEQLGDARIDRQENSRQQRKAEIMESIKRLYPGSVYGRLIDLCQPTQKKYQIAVTKVLGK
NMDAIIVDSEKTGRDCIQYIKEQRGEPETFLPLDYLEVKPTDEKLRELRGAKLVIDVIRY
EPPHIKKALQYACGNALVCENVEDARRIAFGGPYRHKTVALDGTLFQKSGVISGGASDLK
AKARRWDEKAVDKLKEKKEKLTEELKEQMKAKRKEAELRQVQSQAHGLQMRLKYSQSDLE
QTKTRHLSLNMQEKSKLESELANFGPRINDIKRIIQSRERDITQLRDRMNLVEDEVFFEF
CKEIGVRNIREFEEEKVKRQNEIAKKRLEFETQKTRLAIQLDYEKNQLKEDQEKVMMWEQ
TVKKDENEIERLKKEEHRHMKIIDETMAQLQDLKNQHLTKKGEVNDKNREMEEIRKKLGS
ANKELTQLQKEVTAIETKLEQKRSDRHNLLQACKMQDIKLPLKSGTMDDISQGEGGSQVE
DAISSPKASSSVHAKEALIEIDYSNLNEDLKDALSEDEIKGEMNTLQQRLNEQQSILQRI
SAPNMKAMEKLESVRDKFQETSDEFEAARKRAKKAKQAFEQIKKERFDRFNACFESVATN
IDEIYKALSRNSSAQAFLGPENPEEPYLDGINYNCVAPGKRFRPMDNLSGGEKTVAALAL
LFAIHSYKPAPFFVLDEIDAALDNTNIGKVANYIKDQSVQNFQAIVISLKEEFYTKADSL
IGVYPEQGDCVISKVLTFDLSQYPDANPNPND
NT seq 3699 nt   +upstreamnt  +downstreamnt
atgggatatttaaaactaatcgagatcgaaaatttcaaatcatataaaggacgccaaata
ataggaccgtttcacaagtttacagcaataattgggccaaatggatcaggaaagtccaac
ctaatggacgccatcagttttgtattagctgaaaagactagtaacttacgtgttaaaacc
ctgaaggatctcatccatggagcaccagtgggaaaaccagcagcaaaccgtgccttcgtg
agcatggtgtattgcgaggacaatggggaggaatgcactttcacacgggccatcattggt
tcttcatcagagtaccgaatcaacagtaaagtggtcgggctttcagattacagtgaggaa
ctggagaaactgggtatacttattaaggccagaaactttcttgtattccagggtgcagta
gagtctatagccatgaagaatcctaaagagaggacagctttgtttgaggaaatctcccgt
tctggtgaactggcccaggaatatgaccgcagaaagaaagagatggtgaaggcagaagag
gacacacagttcagctatcaccgtaagaagaacattgcagcagagcgcaaagaagccaag
caggaaaaagaggaggcggagaggtaccagagactgaaggatgaggttgtcagggctcat
gttcagctacagctctttaaactctaccataatgaggaggagatcgagaaactgaaccga
gagttgtctcaacgcaaccgtgagattgataaagacagaaagaagatggatcatgtggag
gaagagcttaaggacaagaagaaagagcttggaagaatgatgagagatcagcagaatgtg
gagaaggagataaaagagaaagatgctgagctgaaccagaaacggccacagtatatcaag
gccaaggagaacacagctcataaaattaagaagctggaggtggccagaaagtccttgcag
aatgcccagaagatgtacaagaagcgtaaggcggacatcgaggaactggaccgtgagcaa
ggggctgtggagatgtcaaggcaggagtttgaggagcggatggaagaagaggcacagagt
caaggccaagatctgacactggaggagaaccaggtaaaacagtatcacaggctgaaggag
gaggctagtaagcgggcagctactttggcacaggagctggagaagtttaacagggaccaa
aaggctgaccaggatagacttgatttggaggagaggaagaaaattgagactgaggccaaa
ataaagcagaagatccgagagattgaagaaaaccagaagcgtattgaaaagctggaggac
tatattgcaaccagcagacagtctctggatgaacagaggcgtatggaggaggaattgact
gaggaagtggagctggccaaaagaaggattgatgagataaacatggagttaaaccaagtg
atggagcaacttggagatgctcgcattgacaggcaggaaaacagccgtcagcagcgcaaa
gctgaaattatggagagcattaaacggctctaccctggctcagtgtatggcagactgatt
gacttatgccagccaacccagaagaaataccagattgctgtgaccaaagttttgggaaaa
aacatggatgccatcattgtggactctgagaaaaccggcagagattgcatccagtatatt
aaagagcaaagaggagaacctgagacctttctacccctggactatttggaggtgaaacct
acagatgagaaactgagagagcttcggggggcaaagctggtgattgacgtgatccgctac
gagcccccacacataaagaaagcccttcagtatgcctgtggcaatgctttagtgtgtgaa
aatgtggaggacgctcgtagaattgcctttggaggaccataccgccataagactgtggcc
ttggatggcactctcttccaaaagtcaggtgtgatctctggaggagctagtgacctgaaa
gccaaggctcggcgctgggacgagaaagctgtggacaaacttaaggaaaagaaagagaaa
ctgacagaggaattgaaggaacaaatgaaggcaaagaggaaggaggcagagctcagacag
gtccagtctcaggctcacggactgcagatgagactaaaatactctcagagtgatctggaa
cagacaaaaacccgccacctctctctgaacatgcaggagaaatcaaagttggagagcgag
ctggcaaattttggtccacgaatcaatgacatcaaacgaatcatccaatcacgagagagg
gacataacacagctaagagatcgtatgaacctggtagaggatgaggtcttttttgaattc
tgcaaagagatcggtgtgcgaaatatcagagagtttgaagaggaaaaagtgaagaggcaa
aacgagattgccaaaaaacggttagagtttgagacccaaaagacccgcctggccattcag
ttggattatgagaagaaccagttgaaggaggaccaggagaaagtcatgatgtgggagcag
actgtgaagaaggatgagaacgaaatcgaaagacttaaaaaggaggaacacaggcacatg
aagatcattgatgagactatggctcagctacaggacctgaagaaccagcatctcactaag
aaaggagaagttaatgacaagaaccgagagatggaggagatccgcaagaaactgggctcg
gccaacaaagagctgacccagctgcagaaggaagtaaccgccattgagaccaaactggaa
cagaaacgcagtgaccgacacaacttactgcaagcctgcaagatgcaggacatcaaactg
cccctcaaatcagggacaatggatgacatcagccagggagagggaggctcacaagttgag
gatgcgattagcagcccaaaggcatcaagttcggttcatgccaaagaggcccttattgag
attgactacagcaacctgaatgaagacctcaaggatgctctgtcagaagacgaaatcaag
ggagagatgaacaccctccagcagaggctgaacgagcagcagagtatcctgcagagaatc
agtgctcccaacatgaaggccatggagaaactggagagcgtcagagacaagtttcaggag
accagtgatgagtttgaagctgcccggaaaagagcgaagaaagccaaacaagcatttgag
cagatcaaaaaagagaggtttgaccgattcaatgcctgttttgagtctgttgccacaaac
attgatgagatctacaaagcgctttcacgtaacagcagtgcacaggcattccttggacca
gagaacccagaagaaccatatttagatggaatcaactacaactgtgtggccccaggaaag
aggttcaggcccatggataacctttcaggaggagagaagactgtagcagctttagctctc
ctttttgctattcacagctataagcctgcacctttctttgtcctggatgagattgatgct
gctttggataataccaacattggcaaggtggctaactacataaaggaccagtccgtccag
aatttccaggccattgttatctctctcaaagaggagttctacacaaaagccgactctctc
attggagtttaccctgagcaaggagattgtgtcatcagtaaggtgctgacctttgatctt
tctcagtatccagacgccaatcctaatcctaatgattag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (35)   
   KEGG ORTHOLOGY (1)   
   RefGene (29)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   ZFIN (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (3)   
   RefSeq(nuc) (1)   
   GenBank (1)   
   EMBL (1)   
Protein domain (8)   
   Pfam (8)   
All databases (53)   

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