KEGG   Danio rerio (zebrafish): 560393
Entry
560393            CDS       T01004                                 
Symbol
cspg4
Name
(RefSeq) chondroitin sulfate proteoglycan 4 isoform X1
  KO
K08115  chondroitin sulfate proteoglycan 4
Organism
dre  Danio rerio (zebrafish)
Brite
KEGG Orthology (KO) [BR:dre00001]
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   00535 Proteoglycans [BR:dre00535]
    560393 (cspg4)
   04091 Lectins [BR:dre04091]
    560393 (cspg4)
Proteoglycans [BR:dre00535]
 Cell surface proteoglycans
  Others
   560393 (cspg4)
Lectins [BR:dre04091]
 C-Type lectins
  Others
   560393 (cspg4)
SSDB
Motif
Pfam: Cadherin_3 Laminin_G_2 Laminin_G_1 Dynein_IC2 ASI2
Other DBs
NCBI-GeneID: 560393
NCBI-ProteinID: XP_073798790
ZFIN: ZDB-GENE-050519-1
Ensembl: ENSDARG00000078227
UniProt: E7FCN9 A0AC58IX25
Position
25:complement(7228706..7356063)
AA seq 2305 aa
MRAPCPLLSALFLALLYLLQTTNGASYFGDSYCRIDAVQDLSSFQVSLQFKTGRRSGLLL
LAAGHKDYLSLELSNGRLQARIDMGSGEKVLASSMGLQLSNLLDHHVSLLLKDGKLTMAV
DNLYTTFIQLENADEDLNIDQGVFLGGVRDLEVEYLSTAVPSLRGCMSDVMFESHDFDIL
SLANTVCYDTKETCSSEFEAGDGDSVSFISPDSFISFPTWTRPNVGARSLEMLIKTTIED
ALLLFHPGHRTDFIAIGMVGGFLKGIIDLGDGKYMLDNVEIKIDDDQWHRVKVQIESNEF
LIAVDSQPVSLRLNETEGQLDLVGNLYLGGIQKKMKDVFQDDYLIRVEEEITTESFIGCL
GEIKVNQKGRSLQDALITKDIHVKCEGEYDYSSYDDDLEPTPTPPVRISYIDLNTDERHC
FPTEDFPEMFRNVSKLLDITPLLVPEGGEAFVDIVNLNPTFDLNAAGVRHSQIIFTLLSD
PWYGVLSTNSRDGKKFTLLDVVNKKIKYSHHGNEKYGDEMRLEVIAHGTNLPECLSVARQ
FVLPVEIIPVNDIPQFSAGDISVTANGRTRLSPNLIKITDSDNRCDDIEVTVLSNPTPVG
YLETAQLPGFGLRKFTCRQLKEGNIYYVHKGGEVTGLTLQVSNGDLVSQSSTFKLLITQP
QMTLVTNTGLVVNQDSSAPIGIQNLAISATPKTGDVVYDITQPLQFGELQLISDSGLAKR
VMQFHQSDLEQNRLKYIPNFTANHNSMESEVIHFNAQLGQVVLSDNTFTIQIMPALVGIS
KMAPLEVNGGQQQVIKPDQLQAFVKVGRSDSRTVQYAILKRPVRGVLLMLDKELSDGDTF
TQQDILDGFISYSPRVRRAVDFEDQFQFKVFAEDQYSREYTFPIKIKADSNAPVLTNEKL
VVLEGNENIINKEYLWLQTSTSTDFVYRIKQDPKHGRLIRDSPPGVQRFEGAVRVFSNED
LSLNRLIYKHDGTKTKHDQFTFLAFDSRGGNGGQDESHALLTGVFNIAIQSRNDHVPQRV
IQKPFNVVRNDQRLLTTDDILFKDDDSDFNDTQLVYVRVGILSGNIVSSADPTQPIYRFS
QADLRDKKVLFVHHGADRERFQLQVSDGLHKTTAVLQVQAGDPYLHITNNNMMVMDHGST
KTLNTSLLSAETNMDIRSADEIIFDVISPPSDGQIIVSGIESSSFTQEDLTKGVVSYEHS
DQSVSLKDSFTFNVQANGLSTGGTFRIKIFKKGYPSESMISSTKVIIAYEGEHSVIDQTH
LKVEQTDVPPKEMVYSVKDFPRLGHVVKLINDSDSTASPVLDYIHSFTQEDINRGRILYV
SASLQGRDHFTADVSNGLTTIEDLEVQVDIVPRIIPVQVVNLTVREGGSVPLTQDVLNIT
HPYYRSVSIMFIMEEEPEHGDIRFQDDDDPLVSFTWEDVQQGLVLYYHDSSETTEDSFTL
TASAFDITRRSPSLTVGITVLPVNDEPPRVQRNTGMELLAGETSEITANMLSSDDVDTTP
DQLFYSIEMLSNGIVAFKESPDDSVDSFTQAQINNGEVLFIHQGSESGGFSFTVTDGEHT
SPLYRFSVKARQLTISMETKGELMVFPGTRQVISRDILRAITSEDGDVITYSLVKPPRLG
RVIKPNQRGQFEEITRFTQTELDAGAVYYEHQMPSKPFWVLKDSVELALKSPPATELHHS
LPVTVSYYAANRNVSSQLWKNKGVSVVQGQSKVIDSSVLDASNLLASLPEQKRAGQDIVY
EVRRFPVHGRLSLGGSDLPHDAPRFIQEDVARGDLEYHHDDSGASSDSFAFRVHLNPSGR
TPQVQPGAVVLEEIFLISLRRRDSNPPELASLDLLLEALQGSTTIISKNYLNTVDQDSTP
DEVQFTISKSPANGYLIYTDSGDRINKFSQEDINSGRVAFVSDGSLSDGFMEFTVSDGKH
QTDPHTLHIGILAKSLILKKAPEIQVKQGDDETLITEDMLNASTGGPVEEEVLYKITNVP
KYAAVMVDRQPTSAFTQKQIKQGRVSVRFVKSTSPRDSVAFVARSRAANVSSVLNITVKP
LAKVAQNPLLPRGATVLVDRKLLDATPLANKTRTSPTFSMIQQPQGARFVKRGGLDDGQP
VSSFTQQDLDEGRVALEILNTTGGQNGGGQNQDEARFLLKAHGVPPAECVLPFHVVPYDP
SKVYGATLLKVPPVSVSDSNEAGQPEPRWRGDGDKTSGSTSATPVVSRRNTLWAILIPIL
VILLLVLLAGLLAYYLVRRNKTGKHNVQTVAAKPKNGEMSQETFRKTDPANNIPMSNIDS
KGADPELIQHCRTTNPALKKNQYWV
NT seq 6918 nt   +upstreamnt  +downstreamnt
atgagagccccgtgtccgctcctgtctgccctcttcctggcactcctatacctgctccag
accaccaatggagcatcctatttcggggacagctactgtcgcatagatgccgttcaagac
ctgtcaagttttcaagtgtcgctccaatttaaaactggcagacgcagcggcctgctcctg
ctggcagcgggacacaaagattacctttctctggagctcagcaatggcagattacaggct
aggattgacatgggatctggagaaaaggttctggcctcctctatgggtctccaactcagt
aaccttcttgaccaccatgtgtctctccttctgaaagacggcaaactcactatggctgtg
gacaacctgtacacaaccttcatccaattggagaatgcagatgaggacctgaacattgac
cagggagtgtttcttggaggagtgagagatctggaagttgagtacctgagcacggctgtt
ccctccctgcgcggctgcatgagcgacgttatgtttgagtctcatgactttgatattctg
tccttagccaatacagtctgctatgacaccaaagagacatgcagcagtgaatttgaggct
ggagatggagactctgtaagcttcataagcccagactcgttcatctctttccctacatgg
acaagacctaacgttggagcccgtagcctggagatgttaatcaagacaaccattgaggat
gcactgttgctcttccatccaggacaccgaacagacttcattgcaataggaatggtggga
ggtttcctaaaaggcattattgatctgggagatgggaagtatatgctggacaatgtggaa
ataaaaatcgacgatgatcagtggcacagagtaaaagttcagattgaaagcaacgaattc
ctgatagctgtggatagtcaaccggtttcacttcgtcttaatgagactgaaggacaactg
gatctagtggggaatctgtacctaggaggtattcagaagaagatgaaggatgtgtttcaa
gatgattatctgattcgtgttgaggaggagatcacaacagagtccttcatcggatgttta
ggagagatcaaggtgaatcagaaaggaagaagcctccaggatgctctgataactaaagac
attcatgtgaaatgtgaaggggagtatgattactcatcttatgatgatgatttggagcct
acacctacgcctccagtaaggatctcatacattgatttaaatactgacgaaaggcattgt
ttcccaacagaagactttccagagatgttccgcaatgtgtccaagctcttggacatcact
cctcttctggttcctgaaggaggagaagcttttgttgatatagtaaacctcaacccaaca
tttgacctaaatgctgcaggtgttcgtcattctcagatcatctttactctgctaagtgac
ccctggtatggagtgcttagtacgaactcaagagatggcaaaaagtttacccttctagat
gttgtcaataagaaaatcaagtattcccatcatggcaatgagaagtatggagatgaaatg
aggctggaggtgattgcacatggtacaaatctccctgagtgcttgagcgttgctcgacaa
tttgtgctccctgtagagatcatccctgtcaatgacatccctcagttcagtgcaggtgac
atttcagtcactgccaatgggcgcacacgattgagcccaaaccttattaaaatcacagac
tcagataatcgatgtgatgacatcgaggtcacagtcttgtcaaaccctactcctgtcgga
tatctggagactgctcagcttccaggatttggtcttcgaaagtttacctgtagacagctg
aaagagggaaacatttactatgtccacaagggaggagaagtgacaggacttaccctgcag
gtctcgaatggagatttggttagccaatcaagcacatttaagttgctcatcacccagccc
cagatgactctggtcacaaataccggccttgtggtcaatcaggatagcagtgcccctatt
ggaatacagaatttggccatttccgctacgccaaaaacaggagatgttgtttatgatatc
actcagccacttcagtttggagaactgcagttgatctcagacagtggccttgcaaaaaga
gtcatgcaatttcatcagtctgatctagagcagaaccgattgaaatacattcccaacttc
acagccaatcacaacagcatggagtccgaggtaattcacttcaatgcacagcttggacag
gttgttctttcagacaacacatttacaattcagatcatgcctgctcttgtaggaatatca
aaaatggctccgttggaagttaatgggggacagcaacaagtcattaagcccgatcaattg
caagcttttgtgaaggtaggccgtagtgattcaagaacagtccagtatgcaattttgaaa
cgtccagtacggggagtcttgttaatgcttgataaagagttatctgatggtgataccttc
actcaacaagacattttggatggtttcattagctacagtcctcgtgtgcgcagggcagtt
gactttgaggatcagttccagttcaaagtgtttgcagaagatcagtactccagagaatac
acctttccaatcaaaatcaaggctgattctaatgcacctgtcctaaccaacgaaaaactt
gttgtgcttgaaggaaatgaaaacatcataaataaggaatatctctggcttcaaacctcc
acctcaacagactttgtgtacagaattaaacaagatcccaagcatggtcgtcttatcaga
gattctccacccggtgtgcaaaggttcgaaggtgcagttcgggtctttagcaatgaggat
ctttctttgaacaggctgatttacaaacatgatggaacgaaaacaaagcatgaccagttt
actttcctggcatttgattcaagaggtggcaatggtggacaagatgagagtcatgcatta
cttactggagtgtttaacattgcaatacagtccaggaatgaccacgtgcctcaaagggta
atacaaaaaccatttaacgttgtcagaaatgatcagcgcttattgaccactgatgacatt
cttttcaaagacgatgactctgactttaatgatacccagctggtttatgtgagagtggga
attctttcaggaaacattgtctcttctgcagacccaacacagcctatataccgtttcagc
caggctgacttgagggataagaaggttttgtttgtccaccatggggcagatcgcgagcga
ttccaacttcaagtatctgatggtttacacaagaccacagctgtcctgcaagtgcaagca
ggtgatccttatctacacataaccaacaataacatgatggtcatggaccacggcagcacc
aagacattgaacaccagtctactaagtgcagaaaccaacatggacatcagaagtgcagat
gagatcatttttgatgtgatttctcctcccagtgatggtcagatcatagtcagtggaatt
gaatcttcatcatttacacaggaagacctgactaagggtgtggtctcttatgaacacagt
gaccagagcgttagcttgaaagattcctttaccttcaatgtgcaagctaatggcctgtcc
acaggaggaactttcaggattaagatattcaagaaaggctacccatcagaatcgatgatt
tcatcaaccaaagtgatcatcgcttatgaaggggagcactctgttattgaccaaacccac
ctgaaggtggagcagacagacgtcccacccaaagagatggtgtactcggtaaaagacttc
cctcgccttggtcacgtggtcaaactcatcaatgactcggacagcaccgcatctcccgtc
ctggactacattcattccttcacacaggaggacatcaaccggggcaggatcctttacgtc
tccgcttccctgcagggccgcgaccacttcaccgcagatgtcagcaacggcctgaccacc
attgaagacctggaggtgcaggtggacatcgttccccgaatcatacctgttcaggtggtc
aatctgacggtgagggaaggcggatcagtgccgctgacccaagacgtgctcaatatcaca
cacccctactaccgctccgtcagcattatgtttattatggaggaagaacctgagcatgga
gatatcaggtttcaggatgatgacgatccgcttgtcagcttcacctgggaggatgtccag
cagggtctggtgctttattaccatgacagcagcgagaccacagaggacagtttcaccctg
acggcctcagcttttgacatcacccgcagaagcccatctctgaccgtcggcatcaccgtc
ctgcccgtcaatgatgaaccgcctagagtccagcgcaacactggcatggagctgctagct
ggtgagacgtctgaaatcactgccaatatgctgagcagcgatgatgtggacacgacaccg
gaccagctgttttactccatcgagatgctcagcaatgggatcgtagcctttaaagagtct
ccggatgacagcgtggacagtttcacgcaggctcagattaataatggagaggttttattc
attcatcagggctcagaatctggtggcttcagcttcaccgtgactgatggagaacacact
tcacctctttaccgcttctctgtcaaagcacggcagctcaccatatccatggaaacaaag
ggcgaactcatggtcttcccaggcaccaggcaggtgatcagtagagatattttgcgggct
ataacaagtgaagacggtgatgtaatcacatactcgctggtgaaacctcctcgcttggga
cgtgtaatcaaacctaaccagcgtggacagtttgaggagatcaccagattcacacaaact
gagttggatgccggtgctgtgtattatgaacatcaaatgccatccaagcccttctgggtc
ctgaaggattctgttgagctagccctcaaatcaccgccagcaacagagctgcaccacagc
ctgccggtcactgtctcatactacgcagccaatcgaaatgtgtcatcccagctctggaag
aacaaaggtgtatctgtggtgcagggtcagtctaaagtgatcgacagctctgttttggat
gcctccaatctgcttgctagcttgcctgagcaaaagcgggcaggacaagacattgtctac
gaagtacgccggttcccagttcatggacgactgtctcttggagggtcagatctgccacac
gatgctccccgttttattcaggaagatgtggcacgtggggatctggagtaccatcacgat
gactccggagcatcttcggatagcttcgctttccgtgtccatctgaaccccagtggtcgc
accccgcaagtccagcctggtgccgtggttttagaggagatctttttgatctccctcaga
cgacgagactcaaacccgccagagctcgcaagcttggacctgcttctggaagcactgcag
ggctccacgaccatcatttccaaaaactacctcaacacagtcgaccaagacagcacacca
gacgaagtccaattcaccatctccaagagtcctgctaatggatatctcatctacacagac
tcaggagacagaatcaacaagttcagccaggaagatatcaactctgggcgggtggctttt
gtcagtgatggaagcctgtctgatggtttcatggagtttacagtgtcagatgggaaacac
caaacagaccctcacacgctgcatattggaatcctggccaaatccctaatactgaagaaa
gctccagagatccaggtaaaacagggtgatgatgagacactaatcactgaggacatgttg
aacgcttctactggaggtcccgttgaggaggaggtactctataaaataaccaacgtccca
aaatatgctgctgtaatggtagacagacagccaacctcagctttcacacagaagcaaatc
aagcagggaagagtaagtgtccgatttgtgaagtccacctccccaagagacagcgtggcc
tttgttgctcgaagcagggcagcgaatgtatcctcagtcctcaacattactgtgaaacca
ctggcaaaggtggcacaaaatcccctgctacccagaggtgctactgtgcttgtagacaga
aagttgttggacgctactcctctggccaacaaaaccagaacatctccaaccttcagcatg
attcaacaacctcaaggagctcggtttgtcaaaaggggtgggctcgatgacggacaacca
gtgagctctttcactcagcaggatctggatgaaggccgggtagctttggagatcttaaac
acaaccgggggccaaaacggtggaggtcaaaatcaagatgaagcacggtttctcctaaag
gcgcatggcgtacctcctgcagaatgtgtcttgcccttccacgtggttccttatgatcct
tccaaagtttatggagccacattgctcaaggtgccaccggtgtcggtttctgacagcaat
gaagcaggtcaacctgagccccggtggaggggagatggtgacaagacttcaggcagcact
tcagcaactcctgtggtgtctagaaggaatactctgtgggctatccttattcccatcctt
gtcatcctcctacttgtgctcctggctggactgctggcatattacctggtccgacgcaac
aaaaccggtaaacacaatgtccagacagtggcagcaaagccgaagaatggggaaatgagt
caggaaactttcaggaaaacggatcctgcaaacaacatcccaatgtcaaacatcgactcc
aaaggggcggatcctgagttaatacagcactgtcggacaacaaacccagcactaaaaaag
aaccagtactgggtttga

  All links  
Gene (36)   
   RefGene (31)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   ZFIN (1)   
Protein sequence (6)   
   UniProt (2)   
   RefSeq(pep) (4)   
DNA sequence (14)   
   RefSeq(nuc) (4)   
   GenBank (5)   
   EMBL (5)   
Protein domain (5)   
   Pfam (5)   
All databases (61)   

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