KEGG   Danio rerio (zebrafish): 562381
Entry
562381            CDS       T01004                                 
Symbol
sox12
Name
(RefSeq) transcription factor SOX-12
  KO
K09268  transcription factor SOX11/12 (SOX group C)
Organism
dre  Danio rerio (zebrafish)
Brite
KEGG Orthology (KO) [BR:dre00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:dre03000]
    562381 (sox12)
Transcription factors [BR:dre03000]
 Eukaryotic type
  beta-Scaffold factors with minor groove contacts
   HMG SOX
    562381 (sox12)
SSDB
Motif
Pfam: HMG_box HMG_box_2
Other DBs
NCBI-GeneID: 562381
NCBI-ProteinID: NP_001025449
ZFIN: ZDB-GENE-040724-33
Ensembl: ENSDARG00000025847
UniProt: Q7SZW4
Position
11:complement(24190164..24191928)
AA seq 355 aa
MVQQRTHKYSSVMDSNSSREVFVGLAAEDDAEVFGHVPSNKDPNWCKTPTGHIKRPMNAF
MVWSQIERRKIMEQWPDMHNAEISKRLGKRWKLLPDYEKIPFIKEAERLRLKHMADYPDY
KYRPRKKSKGSTPVKLGEKLPMKSSKPLPGRSSGLSCKGLKIKPASSKHKMNFSSNKYKS
YSESMSDDDTMDVNLESPVTQQDDRNTSSHFVLHQQATVQSEDQQPIPELRVKVPISQTS
SIQSLSSDSECQAFPESTTSEPRGSTSGRSSTPTSTSSSSLVSSACSDEELDEELLHIIS
NSMPMDCSTLDKDFEAFNANSGSHFDFPDYCTPEVNEMISGDLLVPSISDLVFTY
NT seq 1068 nt   +upstreamnt  +downstreamnt
atggttcagcaaagaacccacaaatactcgtcagtcatggacagcaattcaagcagagag
gtgtttgtgggactggcggctgaggacgatgctgaggtgtttggacatgtaccttctaac
aaagaccccaactggtgcaaaactccaactgggcacatcaaaagaccaatgaacgctttt
atggtctggtctcagattgaaagacggaagatcatggagcaatggcctgatatgcacaat
gctgagatttcaaagcgccttgggaaacgctggaaactactgcctgactatgagaagata
ccctttatcaaagaggccgaaagactgcgtctaaagcacatggctgactatcctgactac
aagtaccggcccaggaagaaaagcaagggctcaacccctgtcaaacttggcgagaagttg
cctatgaaatccagcaagccccttccaggaagatcttccgggctctcctgcaaagggctt
aagatcaaacctgcttcttcaaagcataaaatgaactttagtagcaataaatacaagagc
tacagtgagagcatgagcgacgacgacaccatggatgtaaacctagaaagtccagtgact
cagcaagacgatcgcaacacgtcaagtcactttgtccttcaccagcaggctactgttcaa
tctgaggaccagcaaccaattcctgagctcagagtgaaagtacccatctctcaaaccagc
agcatccagagtctctcctcggacagcgaatgccaggctttcccagagtccacgacgagc
gaaccacgagggtccacatctggaagatcttccactccgacctcgaccagctcctcctct
ttggtgtcgtcagcatgttcggatgaggaactggacgaggaactcttgcatataatttcc
aacagtatgcctatggactgttccactctggacaaggactttgaagcatttaacgccaac
tcaggatctcattttgacttcccagattactgcactccagaggtgaatgaaatgatttct
ggagacttgctcgtgcccagcatctcagacctagtgttcacctactga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (11)   
   KEGG ORTHOLOGY (1)   
   RefGene (5)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   ZFIN (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (2)   
   Pfam (2)   
All databases (19)   

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