KEGG   Danio rerio (zebrafish): 562710
Entry
562710            CDS       T01004                                 
Symbol
sox1b
Name
(RefSeq) transcription factor Sox-1b
  KO
K09267  transcription factor SOX1/3/14/21 (SOX group B)
Organism
dre  Danio rerio (zebrafish)
Brite
KEGG Orthology (KO) [BR:dre00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:dre03000]
    562710 (sox1b)
Transcription factors [BR:dre03000]
 Eukaryotic type
  beta-Scaffold factors with minor groove contacts
   HMG SOX
    562710 (sox1b)
SSDB
Motif
Pfam: SOXp HMG_box HMG_box_2 Peripla_BP_4
Other DBs
NCBI-GeneID: 562710
NCBI-ProteinID: NP_001032751
ZFIN: ZDB-GENE-060322-5
Ensembl: ENSDARG00000008131
UniProt: Q2Z1R2
Position
1:46194333..46196106
AA seq 340 aa
MYSMMMETDLHSPGAQTNTNTGHTGPNSGSKVNQDRVKRPMNAFMVWSRGQRRKMAQENP
KMHNSEISKRLGAEWKLMSEAEKRPFIDEAKRLRAMHMKEHPDYKYRPRRKTKTLLKKDK
YSLAGGLLAGSGGGGGVGLGMGAAGVGQRLESPVGHGGSTAASYAHMNGWTNGAYSGQVA
AAAAAAAMMQEAQLAYGQHPGSGAHHHHGHHHHPHNPQPMHRYEMTALQYSPLSNSQSYM
SASPSGYGGISYTQHQNSSVASSGAIGALGSLVKSEPSVSPPVNAHSRAPCSGDLREMIS
MYLPTAEAGDPSVQSRLHAVPQHYQSSTTSVNGTVPLTHI
NT seq 1023 nt   +upstreamnt  +downstreamnt
atgtatagcatgatgatggagacggacttgcactctccaggagcccagactaacacaaac
acgggtcacacgggacccaacagcggcagcaaagttaaccaagaccgcgttaagagaccc
atgaacgcctttatggtgtggtctcggggtcagcgcagaaaaatggctcaggagaaccca
aagatgcacaactccgagatcagcaagcgcctcggggcggagtggaaactcatgtccgag
gcggaaaagcgacccttcatcgacgaggcgaaacggctgcgcgccatgcacatgaaggag
catccggattacaagtaccggccccggaggaagaccaagacgctgctcaaaaaggacaag
tactctttggcgggtggcctgctcgctggatcagggggcggaggtggcgtggggctggga
atgggtgcagcgggggtcggccagaggttagagagtccggtgggtcacggcgggagcacc
gcggcgagctacgcgcacatgaacggctggaccaacggcgcgtactcgggccaggtggcg
gccgcagcggcagcagccgcaatgatgcaggaggctcagctcgcgtacggtcagcacccg
ggcagcggagcgcatcaccaccacgggcaccaccaccatccacacaacccccagcctatg
caccgctacgaaatgacagctctccagtacagccccctctcaaactctcagagttacatg
agcgcctcgccttcaggatatggggggatatcctacacacaacaccaaaactcgagtgtg
gcgtcgtctggggccatcggcgcgctgggctcgctggtcaaatcggagccaagcgtaagc
cctcccgttaacgcgcactctcgagccccctgttccggagatttgcgagagatgataagc
atgtatttaccgacggcggaggcgggggatccgtccgtccagagcagacttcacgctgta
ccccaacactatcaaagttccacgacgagcgtaaacggaaccgttccactgacacacata
tga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (16)   
   KEGG ORTHOLOGY (1)   
   RefGene (10)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   ZFIN (1)   
Protein sequence (3)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (1)   
DNA sequence (7)   
   RefSeq(nuc) (1)   
   GenBank (3)   
   EMBL (3)   
Protein domain (4)   
   Pfam (4)   
All databases (33)   

Download RDF
DBGET integrated database retrieval system