KEGG   Danio rerio (zebrafish): 563772
Entry
563772            CDS       T01004                                 
Symbol
trim54
Name
(RefSeq) tripartite motif-containing protein 54
  KO
K10653  tripartite motif-containing protein 54
Organism
dre  Danio rerio (zebrafish)
Pathway
dre04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:dre00001]
 09140 Cellular Processes
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    563772 (trim54)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:dre04121]
    563772 (trim54)
Ubiquitin system [BR:dre04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   TRIM/RBCC proteins
    563772 (trim54)
SSDB
Motif
Pfam: zf-RING_UBOX zf-C3HC4_2 zf-B_box zf-C3HC4 zf-C3HC4_4 zf-C3HC4_3 zf-RING_5 zf-RING_2 zf-RING_6 CYP38_PsbQ-like EFR3_ARM Sina_RING SpoIISA_toxin
Other DBs
NCBI-GeneID: 563772
NCBI-ProteinID: NP_001038490
ZFIN: ZDB-GENE-041014-342
Ensembl: ENSDARG00000029907
UniProt: Q5RHH1
Position
20:complement(38730291..38758797)
AA seq 359 aa
MNFTLGFKPSIGDSSSMENLERQLICPICLEIFSKPVVILPCQHNLCRKCANDVFQASNP
LWQNRASTTVSTGGRFRCPSCRHEVVLDRHGVYGLQRNLLVENIIDIYKSESTRPLLPKT
EQQQLMCDQHEEEKINIYCLTCETPTCSMCKVFGAHKDCDVAPLPVIYKKQKTELSDAIA
ILVAGNDSIQALISQMEDICRSIKDNGRRQIQHISDKFDELYAILEERKRELIETVGCEQ
DRKLGHVRSLIRRHGDHLEMSVKLVETAIQSMEEPQMAVFLQSTKDVFKKITDTAKASNI
ERTEVGYESMAHFIINTEDVANMLRHINFRTGKDEEDSGDEAPEGLTTSTGQSGESGTR
NT seq 1080 nt   +upstreamnt  +downstreamnt
atgaacttcactttgggcttcaaaccgtcgatcggagattccagctcaatggagaacttg
gagaggcaactgatttgccccatctgtctggagatattcagcaagcctgtcgtcatttta
ccctgccagcacaatctctgcaggaagtgtgccaatgatgttttccaggcctccaaccct
ctttggcaaaaccgggcctcaaccactgtgtccacaggggggcgtttccgctgcccatca
tgtcgccatgaggtggttttggatcggcatggtgtctacggccttcagagaaatctgcta
gtggagaatatcatagatatctacaaatcagaatccaccaggcccctcctgcccaagaca
gagcagcagcagctgatgtgtgaccagcatgaggaggagaagatcaacatctactgtctg
acctgtgaaacgccgacatgctccatgtgcaaagtgtttggggctcacaaagactgtgat
gtggccccgctgccggtcatttacaagaagcagaagacagagctaagtgatgctattgcc
atcttggtggccggaaatgacagcatacaggctctgatctcacagatggaggatatttgt
aggagcatcaaggacaatggtcggcggcagatacagcacatatctgacaagtttgatgaa
ctttacgccattctagaagagcgtaaaagagaactaatcgagactgttggttgtgagcaa
gaccgaaaactgggtcatgttcgatcactaattcgtcgccacggagatcacttagagatg
tctgtcaaactggtggagacagccattcagtccatggaggagcctcagatggctgtattc
ctgcagagcacgaaggatgtgtttaaaaagatcacagacacagccaaggcctccaacatt
gagcggacggaggtgggttacgagagcatggcccacttcatcatcaacacggaggatgtg
gccaacatgctgagacatatcaacttccggacaggtaaagatgaggaagacagtggtgat
gaagctcctgaaggcctgactacctcaactggtcaaagtggtgaatcagggacgcgctaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (8)   
   KEGG ORTHOLOGY (1)   
   RefGene (2)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   ZFIN (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (3)   
   RefSeq(nuc) (1)   
   GenBank (1)   
   EMBL (1)   
Protein domain (13)   
   Pfam (13)   
All databases (30)   

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