KEGG T01004: 565373

Danio rerio (zebrafish): 565373

Entry

565373            CDS       T01004

Symbol

agrn

Name

(RefSeq) agrin precursor

K06254

agrin

Organism

dre Danio rerio (zebrafish)

Pathway

dre04512

ECM-receptor interaction

dre04820

Cytoskeleton in muscle cells

Brite

KEGG Orthology (KO) [BR:dre00001]
09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    565373 (agrn)
09140 Cellular Processes
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    565373 (agrn)
09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   00535 Proteoglycans [BR:dre00535]
    565373 (agrn)
Proteoglycans [BR:dre00535]
Extracellular matrix (ECM) proteoglycans
  Basement membrane proteoglycans
   565373 (agrn)

SSDB

Motif

Pfam:

Laminin_G_1 Kazal_2 Laminin_G_2 Kazal_1 NtA SEA EGF_laminin Kazal_CFAI EGF Laminin_G_3 hEGF

Other DBs

NCBI-GeneID:

NCBI-ProteinID:

ZFIN:

Ensembl:

UniProt:

Position

23:23485818..23914625

AA seq 2028 aa
MGSADRKAVYWPVWSFALVFVLLIQRCHGGCSEKELEKREEEANVVLTGTVEEILNMDPV
HNTYSCKVRVWRYLKGKTMVNGEVLLDGGNKVMIGGFGDPHICDNQVATGDTRIFFVNLA
PEYMWPNHKNELMLNSSLMRITLRNLEEVEHCVEDKPVHFTPAPPPDGCRGKLCGFGAVC
ERDQADPSKGECVCKKIVCTSVVAPVCGSDSSTYSNECELEKAQCNTQRRIKVMRKGPCA
LKDPCSEVTCSFGSTCIQSSDGLSAKCMCPLSCENVPKHVVCGSDGLDYQSECELNMKAC
ATQKNIRVHHQGRCDPCSDTLNSLSTACRVNPKTYQQITFAPAESCPPDEMPICASDGHT
YESMCQMERTALKNNLELKKVSLGSCKEKGGCPNGCKFNAICLLDNGEFRCSCDPIQCDG
TYKPLCGKNGKTYPNDCERKLQECRTQKDIPVKQQGPCDLNLESPCLKKTCEFGALCVVK
NSEAVCECSDACPQDQDPVCGSDGHTYSSSCQMKAMGCALQKQIQMQHKGPCADESRTNC
SFGAICDAQTGRCVCPKGCLETRQPVCGSDGTTYDNECKLNVQACTKQLDLKVVAHGECK
TCGSTVCSWGSQCVNNKCECQQCTGQPVKPVCGSDGNTYNNDCELRLASCQKQRKIEVAK
PGVCDEDCGSGGSGSGSETCEQERCRRYGGTWDDDMEDERCVCELNCQIVLHSPVCGSDG
NTYSSDCELKKTRCEKQIDLSVQSQGPCPTIVSPPPELVASQHCSQTVYGCCEDNKTAAL
GVGLAGCPSMCQCNHYGSYGGTCDPSTGQCSCKPGVGGLKCDRCEPGFWNFRGIVTENMS
GCTPCNCDGLGSVRDDCEQMSGLCSCKPGVKGMKCNVCPDGSKMGVNGCDKGPKAPKSCA
ELVCHFGSSCVEVNGQAHCECPSPDCDEKNKTKVCGSDGVTYADRCQLKTIACRQDKEIK
VEHLGQCKESIELTAKPTPFPTTHRTTPPTAHVKVTKQRHGHRTTTPDSYVVEAMPPPRL
DGARKFSSPFTTHRPTTPYKPLRTSSPPLDFDESGSGEPSGDDEMVSGMEESGEEPLGTT
VATTTLPTAEERSSCDNTAFGCCPDGKMAAVNSEGTNCPSTMRFSGFLHLDKVEGQEVFY
TPEMEDPKSELFGETARSIESAMNELFRKSDVQKDFQSVHVRNLSPSNSIIAHIEAHFDP
DTRFNVGDIEGALLKQLKASKDTGIVVKKPEEENIHINNYGLSTVPFFTTTTTTVASVTT
PTTTTTTMSPSSAYTTLRPITTRRPFTSHRTTTPALATTTAPHVPKTTVSLMNRLGPHAH
SPCDSQPCRHGGTCEEDDNDFTCICPAGRGGAVCEKVIKYFIPSFGGKSYMAFQTMKAYH
TVRIAMEFRASEMTGILLYDGQKSKKDFLSLTLIEGYVELRFNTGSGTASVISKVLVKPG
RWHQLVVVRNRRNAMLSVDNEPSVEGQSPPGTDGLNLDTDLFIGGVLDDMSADVKERTSV
SAGLVGCIRMLDVNNLVYNLQENGGSVLYGSAIGECGNNPCLPNPCKNGASCQVKEAEIF
HCKCVNGFSGPTCADAHNPCDPNKCHPPSRCQVLPEGGYKCECPMGREGRHCEKVSDKGG
AFIPYFTGDSFLELKGLHTYNQDLRQKFSMTIVLLANDSKGMIFYNGQKTDGKGDFISLS
LNDGILEFRYDLGKGPAVIRSKEKIKLNEWNTVNLERASRKGEISINGKDPVRGEAPNQH
TDLNLKESLFVGGAPDFRKVARAAAFKDGFKGAIQKITLMGIPILKADNALSSTDVSMYP
NHPCSKDVCENGGRCNPQLNSYECACRHGFSGHHCQDTIFEKSAGDTEAIAFDGHTFIEY
HNGVTKSEKALLVNKFELSIRTEATHGLILWSGKGVERSDYIALAIVDGRVQMTYDLGSK
PVVLRSTVRVNTNHWIRIKASRALRDGSLQVGNEAAVTGSSPLAATQLDTDGALWLGGLE
ELSVARRLPKAYSTGFIGCVKDVIVDGVELHLVEDALNTPKISHCSAK

NT seq 6087 nt +upstreamnt +downstreamnt
atgggctctgcggacagaaaagcggtttattggcccgtttggtcatttgctctggttttt
gtgcttttgattcagcgttgtcatggaggttgttccgaaaaggagctggaaaagagagaa
gaagaagcgaatgtagttttaaccgggactgtggaggagatcttgaacatggatccggtg
cacaacacttattcctgcaaggtcagagtatggcgctacctgaaaggcaagaccatggta
aatggagaagtgctgctggatggagggaacaaagtgatgatcggtgggtttggggacccc
catatttgtgacaatcaagtggccaccggagatacccgcattttctttgtcaacttggct
cctgagtacatgtggccgaaccacaagaacgaactgatgctcaactcaagcctgatgagg
attactctccgcaacttggaggaggtagagcactgcgttgaagataaacctgttcacttc
acaccggcacctcctcctgatggttgcagagggaagttgtgcggatttggagcggtgtgt
gagagagaccaagctgacccatctaaaggagagtgtgtgtgtaagaagattgtgtgcaca
tctgtggtggcgccagtgtgcggatctgactcctccacctattccaatgagtgtgagctg
gagaaggctcagtgcaatacacagagacgcatcaaggtgatgcgcaaaggcccctgcgcc
ctcaaggacccgtgcagtgaggtaacctgtagctttggcagcacctgcatccagtcatcg
gatggtctgtccgccaagtgtatgtgtcctctgagctgtgaaaacgtccccaagcatgtg
gtgtgtggcagtgacggcctggactaccaaagcgaatgtgaactcaacatgaaggcctgc
gccactcagaagaacatccgtgtgcatcaccagggccgctgcgatccttgcagtgacact
ctgaacagcttaagcacagcctgtcgagtcaacccaaagacctaccagcagattaccttt
gccccggctgagtcttgtccgcctgacgaaatgcccatctgtgccagcgacggacacacc
tacgagagcatgtgtcagatggagcgcactgccctgaagaacaacctggagctcaaaaag
gtctctttaggcagctgcaaggaaaaagggggctgcccgaatggttgtaagttcaacgcc
atatgtttgctggataatggagagtttcggtgctcctgcgatcccatacaatgcgacggc
acgtacaagcccctgtgcggaaagaatggcaagacataccccaacgactgcgagaggaaa
ctgcaggaatgccggacccaaaaagacatccctgtcaaacaacaagggccctgtgatctt
aacctggagagcccctgcctgaagaagacctgcgagtttggagccctgtgcgtggtgaag
aacagcgaagcagtgtgtgaatgctcagacgcctgtccgcaggaccaagaccctgtttgc
ggcagcgatgggcacacgtacagcagctcatgtcaaatgaaggccatgggatgcgctctt
cagaaacagatacagatgcaacacaaaggaccatgtgcagatgagtcccgcaccaactgc
tcgtttggcgcgatctgtgatgcccagactggccggtgcgtgtgccctaaaggctgtttg
gaaacacggcagcccgtatgcggcagcgacggcaccacgtatgacaacgagtgcaagctc
aacgtccaagcctgcactaaacagctggatctcaaggtggtggcccatggagaatgcaaa
acctgtggcagcactgtgtgtagctgggggtcgcagtgcgtgaacaacaagtgtgagtgt
cagcagtgcacaggtcagccggtgaaacctgtgtgtggcagcgacggcaacacatacaac
aacgactgcgagctgagactggcctcctgtcagaaacagaggaagatagaggtggccaag
cctggcgtctgcgatgaagactgtggttcaggaggctccggctcgggatctgagacttgt
gaacaggaacgctgtcgccgatatggaggaacgtgggacgatgacatggaggacgagcga
tgtgtttgtgaactaaactgtcagattgtgctgcacagcccggtgtgcggctctgatgga
aacacgtactccagcgactgtgagctcaagaagaccaggtgcgaaaagcaaatagacctg
agtgtccaaagccaagggccctgtccaactatcgtatcaccacctccagagcttgttgcc
tcccagcactgtagccaaacagtttatggatgttgtgaagataacaagaccgctgccctg
ggtgttggactggctggatgtcctagtatgtgtcagtgcaatcattacggctcatacgga
ggcacatgtgacccctcgactggccagtgttcctgtaaacctggtgtcggtggactgaag
tgcgaccgctgtgagcccggattttggaacttccgtggcattgtcacagaaaacatgagc
ggctgcacaccgtgcaactgtgatggactgggttcggttcgtgatgactgcgagcagatg
tcaggcctgtgctcctgtaagcctggagttaagggcatgaaatgcaacgtgtgccctgat
ggcagcaagatgggagtcaacggctgtgacaaaggacctaaggctcccaagtcctgtgct
gagcttgtgtgccactttgggtcttcatgcgtggaggtgaatggacaggctcactgtgag
tgtccttcaccagattgtgatgagaaaaacaagaccaaggtatgtggttctgatggggtc
acctatgcagaccggtgccagctgaagaccatcgcatgccgacaagataaagagatcaag
gtggagcatttaggccagtgtaaagaatccattgagctgacggccaaacccacccccttc
ccaaccacccaccgcaccacccctcccaccgctcacgtcaaggtcaccaaacagcgacat
ggccaccgcaccaccactccggacagctatgtggtggaggcaatgcctccaccgaggttg
gatggagcgcgaaagttttccagccctttcaccacccaccgtcccactacaccctacaaa
ccactccgcacctcatccccacctctggactttgacgagtcgggcagtggagagcccagt
ggggatgatgagatggtgagcggaatggaggagagcggagaagagccacttggtacaaca
gtagctactaccactcttcccacagctgaggagcgatcgtcctgtgacaacacagcgttc
ggctgctgtcccgatgggaagatggccgccgtcaactcagagggcacaaactgcccatcc
accatgcgtttcagcggcttcctgcacctggataaggttgagggtcaggaggtcttctac
acgcctgagatggaggaccccaaatcggaactgtttggtgaaacggcccgaagcatcgag
agcgctatgaatgagttgttccgcaagtctgatgtccagaaagacttccagagtgtccat
gtgaggaatctatcccccagcaactccataatagcacatatcgaggctcacttcgaccca
gacacaaggttcaatgtgggggatattgagggagcccttctcaaacagcttaaggcatct
aaagacactggcatcgttgtgaagaaaccggaggaagagaacattcacatcaacaactat
ggtctttcaactgttcctttctttaccaccacaacaaccactgtggcgtctgtcacgact
cccactaccaccaccaccacaatgtctcccagttctgcttataccactctccggcccatc
actactagacgacccttcacaagccacagaaccaccacgccagcactagccaccaccact
gcaccacatgtgcccaagaccacagtttcgcttatgaacagactagggccccacgctcac
agtccatgtgactcacagccctgccgacatggaggaacctgtgaagaagacgacaatgac
ttcacctgtatctgtccagcaggacgaggaggagccgtgtgtgagaaagttataaagtac
ttcataccatcctttggtggaaagtcttacatggcgttccagaccatgaaggcctaccat
actgtacgcattgccatggagttcagggcttcggaaatgactgggatattgctctacgat
gggcaaaaaagcaaaaaggactttctttctctgacacttattgaaggatatgtggagctc
aggtttaacactggttcagggactgcttcagttatcagtaaagtcctggtaaagccgggt
cgctggcatcagcttgttgtagtacgtaacaggcgcaatgccatgctgagcgtggacaat
gagcccagcgttgaaggacaaagtcctccaggaacagatggactcaacctggacacagac
cttttcatcggcggagtgcttgatgacatgagtgcagacgtaaaggagaggacatcagtt
tcagcaggtctggtgggctgcatccgcatgctggacgtgaacaaccttgtctataatctg
caagagaatggcggcagcgttctgtacggttcggccattggcgagtgtggcaacaaccca
tgcctgccaaacccctgcaagaacggagcgtcctgtcaggtcaaagaagccgagattttc
cactgcaaatgtgtcaacggtttctctggcccgacctgcgctgatgcccacaacccctgc
gaccccaataaatgccacccgccatcacggtgccaggtccttccagagggaggttacaaa
tgcgaatgtccgatgggacgtgaaggcaggcactgtgaaaaagtgtcagacaagggaggc
gctttcattccttacttcactggagattcttttctggagctcaaaggcctccatacgtat
aaccaggatctcaggcaaaaattcagcatgactatcgttctactggccaatgactccaaa
ggcatgatcttctacaatggtcagaagacagacggcaaaggggatttcatctcgctctct
cttaatgacggcatcctggagtttagatatgacctgggcaaagggccagctgtcattagg
agtaaagaaaaaatcaagctgaacgagtggaacacagtgaatttggaacgggccagcaga
aaaggagagattagcattaacggcaaagaccctgtcagaggagaggcgccgaatcagcac
acggatctcaatctgaaggaatcgctctttgtgggtggagctcctgatttccgcaaagta
gccagagctgctgcgttcaaagatggcttcaaaggggccattcagaagattactttgatg
ggaattccaatcctgaaagctgataatgccctttcgtccactgacgtgtccatgtatcct
aatcatccctgctccaaagacgtttgtgagaatggaggccgctgcaacccccagctgaac
agctatgagtgcgcctgccgccacggattctccggacaccactgccaggacacaatattc
gagaagtccgctggggacacggaggccattgcgtttgatggtcatacattcatcgaatat
cacaacggagtcaccaaaagcgagaaagccctgctggtgaataaattcgagctgagtatc
aggacggaggctacgcatggtctgattttgtggagcggaaagggagttgagcgctctgac
tacatcgccctcgccattgtggatggaagagtacagatgacctatgacctcggctccaag
cctgtggtgctgcgctccactgtacgggtcaacaccaaccactggatacgaattaaggcc
agcagagcgctcagagatggctctctgcaggttggtaatgaggcagctgtcactgggtct
tcacccttggctgccacacagctggacacagacggggctctctggttgggtggactggag
gagctgtctgtggctcgacggctgcccaaagcttacagtacaggcttcattggctgcgtc
aaagacgtgatagtggacggcgtggagctgcatctggtggaggacgccttaaatactccc
aaaatatcacactgttctgccaaataa

All links

Gene (142)   
   RefGene (137)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   ZFIN (1)   
Protein sequence (38)   
   UniProt (1)   
   RefSeq(pep) (37)   
DNA sequence (42)   
   RefSeq(nuc) (38)   
   GenBank (2)   
   EMBL (2)   
Protein domain (11)   
   Pfam (11)   
All databases (233)   

Download RDF

DBGET integrated database retrieval system