KEGG   Danio rerio (zebrafish): 569755
Entry
569755            CDS       T01004                                 
Symbol
col6a1
Name
(RefSeq) collagen alpha-1(VI) chain
  KO
K06238  collagen type VI alpha
Organism
dre  Danio rerio (zebrafish)
Pathway
dre04510  Focal adhesion
dre04512  ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:dre00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    569755 (col6a1)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    569755 (col6a1)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:dre04147]
    569755 (col6a1)
   00536 Glycosaminoglycan binding proteins [BR:dre00536]
    569755 (col6a1)
Exosome [BR:dre04147]
 Exosomal proteins
  Exosomal proteins of other body fluids (saliva and urine)
   569755 (col6a1)
Glycosaminoglycan binding proteins [BR:dre00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   569755 (col6a1)
 Hyaluronan
  Extracellular matrix or blood plasma proteins
   569755 (col6a1)
SSDB
Motif
Pfam: VWA Collagen VWA_2 VWA_3 VWA_CoxE
Other DBs
NCBI-GeneID: 569755
NCBI-ProteinID: XP_009304444
ZFIN: ZDB-GENE-070501-6
Ensembl: ENSDARG00000074908
UniProt: F1Q6P3
Position
11:complement(33996528..34065720)
AA seq 1007 aa
MALNGYILTALCALWAGIFAQDVSRSSFRECPVDLFFVLDTSESVALRAKPPEFYINQIK
TFTKLFIDELKDLRQPCDRDVTWNSGALHYSDDTELVMGLVDLNTKRADLKAAIDRIKYI
GKGTYTDCAIKEGIAELLRAGSHYHENKYIVVVTDGHPITGYKEPCGGIQEAANEARQHA
IKVFAVAISPDQEDTRLSVIATDINYRQNFTAADNSRSTQMSTIRSIIHMITNETKDVCC
SFDCIADGGPQGPPGDPGQRGETGRPGMPGEKGDFGAQGNPGDPGPVGYQGMKGDQGIKG
DKGERGHKGFKGDKGHHGLDGTDGRKGEPGFPGLPGCKGSPGPDGLQGESGPKGDPGQYG
RKGERGDPGRDGEPGRPGNYGPSGAKGDRGPRGANGDKGERGDDGPPGPDGPRGERGQGG
EKGEQGSRGNRGPRGEPGEPGPRGEQGREGSSGANGEPGEQGRAGQPGYRGDEGPAGPEG
DKGPRGIKGAPGDRGLMGERGEDGPPGNGTEGCAGFQGYPGPRGDPGAPGGKGTPGPKGD
DGEPGDTGLDNDRLGPPGTKGAKGHRGPEGKPGPPGPPGPQGADECEILDIIMKMCSCCE
CTCGPLDIAFIVDSSESIGASNFAISKEFIVTIMDRLKLRQFGANESRIGVVQYSGEKSQ
EVVQLGDPNIKTLTDLKQAVKDLRWLAEATYTGEALQYSLRNMLSKLITERSVVLVLTDG
RSDTIRDKVPLNVLCGKGFKVGGVGVTDYAERKPNPEQLDEVVCKDDPRKGFSFVLNNFG
LLLDDNFLQNLTEKICEDKKCPTYTCPISFNDNTDVLIMMDSSASVGAKNFEMTKDFSRM
LAKRFLSAERGNFQVRIGVGQYSNNANLEAEFSTNATQVVAQIADAKFQNAGTQVTNALN
FAIERFRGGRTRKKKLLVFSDGRSQGVNSIQIEKAVEQVSNAGIELYVLAVGNQVNEAHL
RTLVSRGRPYDNTYAYRHLFKVPDYRSLVTGVFYQTVSRKISLETRG
NT seq 3024 nt   +upstreamnt  +downstreamnt
atggcgcttaatggatatatattgaccgctctgtgcgctctttgggcagggatcttcgct
caggatgtctccagatcctccttcagagagtgtcctgtggacctgttctttgtgctggac
acgtctgaaagtgtggctctcagagccaaacctccagagttttacatcaaccagattaag
accttcacaaagctgttcatcgatgagctcaaagacctacgccagccctgtgatcgcgat
gtgacatggaactcgggagcgctgcactacagtgatgacacagagctggtcatgggatta
gtcgacctcaacacaaaacgtgctgaccttaaagctgccatcgacagaatcaaatacatc
ggcaagggaacgtacaccgactgcgccatcaaggagggcatcgctgagctgctcagagcg
ggttcgcattatcatgagaataaatacattgtggtggtgacggatggtcatcctataacc
ggatataaggaaccatgcggtggcattcaggaggccgccaatgaggctcgacaacatgcc
attaaagtgtttgctgtggccatctcacctgaccaggaggacaccagactgtctgtcatt
gccacagatataaactacagacagaacttcaccgctgcagacaactcccgctccacacaa
atgagcactatacgctccatcatccacatgattacaaacgaaacaaaggatgtgtgctgc
tcctttgactgcatcgctgatggaggccctcaaggaccccctggagatccaggtcaaagg
ggagagaccgggagaccaggcatgccaggagaaaaaggagactttggggctcagggaaat
cctggtgatcccggtccagtcggttaccaaggaatgaagggagaccagggaataaaaggt
gataagggagagagaggtcataaaggcttcaagggagacaaaggtcatcatggtctcgat
ggcacggatggacgtaagggcgagccgggattccctggacttccaggctgtaaagggtca
ccagggccagatggtttgcaaggagaatcagggcctaaaggagaccccggacaatatgga
cgcaaaggagaacgaggagatcctggcagagatggtgagccaggaagacctggaaactac
ggaccatctggggccaagggagacaggggtcctcgtggggctaacggcgataaaggcgag
agaggagatgatggaccaccaggaccagatggcccaagaggagaaagaggccaaggtggt
gagaagggtgaacaagggtctcgaggtaacagaggtcccagaggcgagcctggtgaaccc
gggccaaggggtgagcaaggacgtgaaggatcatccggagcaaatggagagccgggtgag
caaggaagagcagggcagccaggttatcgtggcgatgagggtcctgctgggccagaggga
gataaagggcccagaggaatcaaaggggctccaggagacagaggcctgatgggagagagg
ggtgaagacggacctccaggaaacgggacggagggttgtgctggctttcagggttatcct
ggtccaaggggagatcctggagcacctggtggaaaaggaaccccaggacccaagggagat
gatggagagccgggtgacactggattagataatgacagacttggaccacctgggacaaaa
ggagccaaaggtcacagaggacctgaaggaaaacctggacccccaggaccacccggacct
caaggagctgatgaatgtgagattctggatatcatcatgaagatgtgctcttgctgtgaa
tgcacatgtggacccttggatattgcctttatcgtggacagctctgagagtattggagct
tctaactttgccatctctaaagaattcatcgtgacaataatggacagactcaagttaaga
cagtttggtgccaatgagtctcgtattggtgtggtgcagtacagtggtgaaaaatctcaa
gaggtggtacagcttggtgaccccaacatcaagaccctgaccgacctaaaacaagctgtg
aaagacttgcgctggctggctgaggccacatacactggagaagctcttcagtactcgcta
agaaacatgctcagcaagcttatcacggagaggagtgtggtccttgttcttactgatgga
cgctcagacactattagggataaagtgccattaaacgtgctgtgcggcaaaggatttaag
gttggtggggttggagtgacggattacgcagagaggaaacccaatccggaacagcttgat
gaggttgtgtgtaaagatgatcctagaaaaggcttctcctttgtcctaaacaactttggc
ctacttctggatgacaacttcctgcaaaacctgactgagaaaatctgtgaagataagaag
tgtcccacatatacttgtccaatttcatttaatgacaacaccgatgtcctcatcatgatg
gacagctcggccagcgttggcgccaagaacttcgagatgaccaaggacttctcacggatg
ctagctaagcgctttttgtcagcagaaagaggaaatttccaggttcgaattggtgttggc
caatacagcaacaatgccaacttggaggccgaattttccacaaacgccactcaggtggtc
gctcaaatcgcagacgccaagttccagaatgcaggtacacaggtaacaaacgctctcaac
ttcgccatcgagcgcttcagaggcggtaggacgaggaagaagaagctgctggtgttttct
gatggtcgttctcaaggtgttaactccattcagattgagaaagccgtggagcaggtgagc
aacgcaggaattgagctgtatgttcttgctgttggaaatcaggtgaatgaagcgcattta
cgcaccttagtgagccgaggccggccttacgacaacacctacgcctaccgccatcttttc
aaagtacccgactaccgctcattggtcactggggtattttaccaaactgtgtcccgcaag
atttccctggagacgagagggtga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (54)   
   KEGG ORTHOLOGY (1)   
   RefGene (48)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   ZFIN (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (3)   
   RefSeq(nuc) (1)   
   GenBank (1)   
   EMBL (1)   
Protein domain (5)   
   Pfam (5)   
All databases (70)   

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