KEGG   Desulforamulus ruminis: Desru_0006
Entry
Desru_0006        CDS       T01518                                 
Name
(GenBank) DNA gyrase, B subunit
  KO
K02470  DNA gyrase subunit B [EC:5.6.2.2]
Organism
dru  Desulforamulus ruminis
Brite
KEGG Orthology (KO) [BR:dru00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:dru03032]
    Desru_0006
   03400 DNA repair and recombination proteins [BR:dru03400]
    Desru_0006
Enzymes [BR:dru01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.2  DNA topoisomerase (ATP-hydrolysing)
     Desru_0006
DNA replication proteins [BR:dru03032]
 Prokaryotic type
  DNA Topoisomerases
   Desru_0006
DNA repair and recombination proteins [BR:dru03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHIIR (short-homology-independent illegitimate recombination)
     Facilitator
      Desru_0006
SSDB
Motif
Pfam: DNA_gyraseB DNA_gyraseB_C Toprim HATPase_c HATPase_c_3 GyrB_hook
Other DBs
NCBI-ProteinID: AEG58313
UniProt: F6DL04
Position
4548..6467
AA seq 639 aa
MDQQQQQLNEYSADQIQVLEGLEAVRRRPGMYIGSTSARGLHHLVYEVVDNSIDEALAGY
CSRIEVIIHKDNSVTVEDDGRGIPVGIQSKVGKPAVEVVLTMLHAGGKFGGGGYKVSGGL
HGVGVSVVNALSSELEVEIKLDGNLYYQKYSRGIPVTELKIIGKSKSTGTKITFKPDEEI
FEELVFSLETISQRMRELAYLNKGIKIILRDERKETENEQVFQYEGGIQDFVKHLNRNKQ
VLHAKPIYLSGEKEYVSVEIAMQYNDSYSETMLSYANNIHTTEGGTHEVGFKTALTRIIN
DYGRTHNILKNNDPNLIGEDIREGATIVISVKVPEPQFEGQTKTKLGNSEVRGIVDSIFS
EALSTYLEENPSVAKKIIEKGVTASRAREAARKARELTRRKSALETMSLPGKLADCSEKD
PSLCELYLVEGDSAGGSAKQGRDRRFQAILPLRGKILNVEKARMDKILANEEIRAMITAL
GCGIGEDFDISKARYHKIVIMTDADVDGSHIRTLLMTFFYRHMRELIEAGYLYVAQPPLY
RARKGKHDSYLYSDEELEQLLKRIGYDNVNIQRYKGLGEMNPEQLWETTMDPDTRTMLQV
TLEDALEADATFSMLMGDRVEPRKDFIQENARYVRNLDI
NT seq 1920 nt   +upstreamnt  +downstreamnt
atggaccagcagcaacaacagcttaatgaatatagtgcggaccagattcaggttttagaa
ggtttggaagccgtccggcgccggccgggtatgtatattggcagcaccagtgccaggggt
ctgcaccatttggtttatgaagtggtggataatagtattgacgaggcactggctggttat
tgtagtcgcattgaagtcattatccataaagataattcggttacggttgaagatgatgga
cgaggtatcccggtaggtatccaaagtaaagtgggtaaaccggcggtggaagtggtttta
accatgcttcatgccggcggtaaatttggcggcggtggttacaaagtttccggtggtttg
cacggggtgggcgtttcggtggtaaatgctctttccagcgaactggaagtagaaattaag
ctggacggaaatttatactaccagaaatattcccggggcattcctgtaacagaattaaaa
atcattggtaaaagtaaaagtaccggcacaaaaatcacctttaagccggatgaagagatt
tttgaagaactggtgttcagtctggaaaccatttctcagcgcatgagagagttggcttat
ttaaataaagggattaaaatcatcctgcgggatgaacgaaaagaaaccgaaaatgaacaa
gtttttcaatacgagggtggaattcaggatttcgtaaagcatcttaacagaaataaacag
gttctgcatgccaaacccatttatcttagcggtgaaaaggaatatgtcagtgtagaaatt
gctatgcaatataatgattcctacagtgaaaccatgttatcctatgccaataatattcat
accactgaaggcggaacccatgaagtaggctttaaaaccgctcttacccggatcatcaat
gattatggacgtacgcacaatattcttaaaaataacgatcccaatcttattggggaggat
atccgtgaaggagccaccattgttattagtgttaaagtccctgagcctcaatttgaggga
caaactaagaccaagctgggtaacagcgaagttagaggcattgtcgattctattttttct
gaagctttatcgacctatttggaagaaaatccttcggtagcaaaaaagattattgaaaaa
ggggttacggcatccagagccagggaagcagctcgcaaggccagagaacttacccgcaga
aagagcgctttggaaaccatgtctttaccgggaaaattagcggattgctcggaaaaggac
cccagcctttgtgaattatatctggtggagggcgactcggcgggaggctcggctaaacaa
ggcagagaccggcgttttcaggctattttgcctttaaggggtaaaattcttaatgtggaa
aaggctagaatggacaaaatcctggccaatgaagaaatcagggccatgattacggcttta
gggtgcggtattggggaagattttgatattagcaaggcccgttaccataaaattgtgatt
atgaccgatgccgatgtggatggatcccatattcgtaccctgctgatgacctttttctac
cgccatatgagagaattgattgaggcaggatatctatacgtggctcagccacccctttac
agagcgcgcaaggggaagcacgacagttatttatacagcgatgaagaactggaacaactg
ctaaaaagaattggttatgataacgtaaacattcagcgttataaaggcttgggtgaaatg
aatccggagcagttatgggagaccaccatggatccggacacccggaccatgttgcaggta
accctggaagacgccctggaggcggacgctacgttttccatgctgatgggggaccgggta
gagccaagaaaagactttatccaggaaaatgcccgttatgtaagaaatctggatatataa

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Ontology (4)   
   KEGG BRITE (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (16)   

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