KEGG   Desulforamulus ruminis: Desru_2315
Entry
Desru_2315        CDS       T01518                                 
Name
(GenBank) primosomal protein N'
  KO
K04066  primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
Organism
dru  Desulforamulus ruminis
Pathway
dru03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:dru00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    Desru_2315
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:dru03400]
    Desru_2315
Enzymes [BR:dru01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     Desru_2315
DNA repair and recombination proteins [BR:dru03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecBC pathway proteins
     Desru_2315
SSDB
Motif
Pfam: PriA_3primeBD PriA_C DEAD ResIII Helicase_C PriA_CRR zinc-ribbons_6 PriA-like_WH SLFN-g3_helicase zf-ISL3 AAA_30 ADDB_N AAA_19 DZR Zeta_toxin
Other DBs
NCBI-ProteinID: AEG60560
UniProt: F6DM93
Position
complement(2337540..2339729)
AA seq 729 aa
MAYAEVAVSLPVGLEQTFHYRVPESLTGEAVQYSRVEVPFSGRTVQGFILGFSTPPQLKH
LKEIKRVLEKEPFLNHHLYELAQWMVQRYLCSLGDALQCIAGSPVGQQKAERSRGLVAAE
EGSWVGLARAPKQKQALEVALARPGLRKSQLAKTAGVSVAVIEALLAKGLLREGQRPEPV
AWERLDRESWPELTAEQSLAVHELTEALQNPVPSAWLLHGVTGSGKTEVYLRAIAETLSM
GRQAIVLVPEISLTPQMVERFQSRFGSAVAVLHSALSQGEKYAEKARIRNGQATVVLGAR
SAVFAPVANLGLIIIDEEHESSYKQEETPKYHTREVALQRVALAKGVVLLGSATPALESY
CRARPGGPYRLLTLSRRVDRKTLPQVQIIDLKKEMAEGNFSIFSRPLVRALARRLERNEK
SILFLNRRGFATFVVCRHCGQVMRCPHCEISLTLHSNGRLRCHYCGFGVRSPGVCPACGS
KTIRSFGVGTQRVEEELQKLFPGCESIRMDADTTSRKGSHKKLLDQFRQGGAKVLIGTQM
IAKGLDIPQVTLVGVVSADLSLHMPDFRSAERTFQLLTQVAGRAGRGEIAGEVMIQTYDP
EHYSITTAQNHDFLTFYAKEMTVRQALRYPPYSHLIRILFTGLNEADVIGAGQWWRDRLV
NENGAANYQGIEILGPAPAGIPKIKDRYRWQLMIKGSVSKEIRQITRSVLEQAGIRFKQV
SVSIDVDPV
NT seq 2190 nt   +upstreamnt  +downstreamnt
atggcctatgcagaagtggcggtgtctcttccggtgggactggagcaaacctttcattac
cgggtaccggaatccctaaccggggaggctgtccagtacagccgggtggaggtgcctttt
tccggaagaacggttcagggatttattctgggatttagtactcctccccaattaaagcat
ttgaaagaaataaaaagagtactggaaaaagaaccttttttaaatcatcatttgtatgaa
ctggcccagtggatggtgcaaagatacctttgcagtctgggagatgccctgcagtgtatt
gcaggatcaccggtgggacagcagaaggccgaaaggagccggggactggtggctgcggag
gagggatcctgggtgggtttggccagagctcccaaacagaaacaagctctggaggtggct
ctggcgaggcccggactccggaaatcccaactggccaaaacggccggagtatccgtcgcg
gtgattgaggctttgctggccaagggcttactccgggagggacaaagaccggagcccgtt
gcttgggagcggttggaccgggagtcatggccggaacttaccgctgaacagtctttggca
gtgcatgaactgacggaagctttacaaaatcccgtaccttcggcctggttgttacatgga
gttaccggcagcggcaaaaccgaggtttatctaagagccattgctgaaaccctttccatg
gggcgacaggccattgttctggtcccggaaatttctctgaccccccagatggtggaacgc
ttccagtcccgcttcggcagtgcggtggctgtgctacatagcgccctgtcccaaggggaa
aaatatgctgaaaaggcacggataagaaatggtcaggccacggtggttttaggggcccgt
tcggctgtttttgccccggtggccaatttgggattaattatcattgatgaagagcatgaa
tcttcttataaacaggaggaaacgcccaagtatcatacccgggaagtggctctgcagaga
gtggccctagccaaaggggttgtgcttctgggaagcgccaccccggccctggaaagctac
tgccgggcccggcccggaggcccctaccggttgctgaccctcagccgcagggtcgaccgg
aaaactcttccccaggtacaaattatcgatttaaaaaaggaaatggccgagggaaacttc
agcattttcagcaggccgctggtaagggccttggcccggcgtttggaacggaatgagaaa
agtattctttttctaaaccggcggggatttgccacttttgtggtttgccgtcattgcggc
caggtgatgcgctgtccccactgtgaaatttccctgaccctgcacagtaacggccggctg
cgctgccactactgcggttttggggttcgttccccgggtgtctgcccggcatgcggcagc
aagaccatccggagtttcggcgtaggaacccagcgggtggaagaggaactgcagaaactc
tttcccggctgtgagagcattcgtatggatgccgataccacctcccgcaaggggtcgcac
aagaaactgctggatcaattcagacagggtggggctaaggtactgatcggtacccagatg
attgccaaaggattggatattccccaggtaaccctggtgggggtggtcagtgccgattta
tccctgcatatgccggattttcgttctgctgaacggacctttcaactgttaacgcaggtg
gccggacgtgccggaaggggagagatcgccggggaagtgatgatccaaacctacgacccg
gagcattacagtattaccacggcgcaaaaccacgattttttgaccttttatgccaaggag
atgacggttcgtcaagccctgcgttatcctccttacagtcatttaattcgcattttgttt
accggcctgaatgaggccgatgtcatcggcgccggccagtggtggcgggaccggctggtg
aatgaaaatggtgcggccaattatcagggcattgaaatactgggtcctgctccggcaggc
attcctaaaataaaggatcgctaccggtggcaattgatgattaaaggatctgtcagcaaa
gaaatccgtcagattacccggagcgttttggaacaggcgggcatacgatttaaacaggtg
tccgtaagcatcgacgtagacccggtctag

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (15)   
   Pfam (15)   
All databases (25)   

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