KEGG   Maridesulfovibrio salexigens: Desal_0161
Entry
Desal_0161        CDS       T00969                                 
Name
(GenBank) ribonuclease, Rne/Rng family
  KO
K08300  ribonuclease E [EC:3.1.26.12]
Organism
dsa  Maridesulfovibrio salexigens
Pathway
dsa03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:dsa00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Desal_0161
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:dsa03019]
    Desal_0161
   03009 Ribosome biogenesis [BR:dsa03009]
    Desal_0161
Enzymes [BR:dsa01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.26  Endoribonucleases producing 5'-phosphomonoesters
    3.1.26.12  ribonuclease E
     Desal_0161
Messenger RNA biogenesis [BR:dsa03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     Desal_0161
Ribosome biogenesis [BR:dsa03009]
 Prokaryotic type
  rRNA processing factors
   Desal_0161
SSDB
Motif
Pfam: RNase_E_G RNase_E_G_Thio S1 TusA
Other DBs
NCBI-ProteinID: ACS78231
UniProt: C6BVL7
Position
176148..177620
AA seq 490 aa
MTGKKQKKKEKMFISVLPGEQVEVALTQEGQVIEYYVEMLHQAKTKGNIYKGYIHNIDAA
LQAAFINYGAERNGFLQVDEVHPEYYQGAYKLKKGHRYPLLQKVLKPGQEIFVQVVKEPT
GKKGAFLSSYLSIPGRYFVLTPGREQIGISRKIEDEKERERLKELIDEVNPGAGVGVIVR
TASKGQSKSALRRDFKFLTRLWNDIREKGQDAKPPSLVYEEMGLAARAVRDYLSSDVVEI
WVDDQETLEQVKKLATLSFPRRSNLVKLHSDTDKSLWERFNLVKQIEQIYGREVNLPSGG
RLVFDQTEALTAIDINSGKIGGERNFKEMALKTNKESAEMIARQLKLRDLGGQVVIDFIE
MKDPKHCREVEKTMRAALKGDRARTDVGRISRFGLMELVRQRLGSSAIAVSTEACPCCDG
TGIRRNMEWQAMQAIKDIYRMLRRPNCESPLVYDAEEELALYLLNHKRDAISQYEKMFGT
KINIEIQWNE
NT seq 1473 nt   +upstreamnt  +downstreamnt
atgacaggtaaaaagcagaagaaaaaagagaaaatgttcatcagcgttctccccggcgaa
caggtggaggtcgcgctgactcaggaaggtcaggtcatcgagtattacgtagaaatgctc
catcaggccaagaccaaaggtaacatctacaaaggttacattcataacattgatgccgcg
ttacaggcggctttcatcaactacggggctgagcgtaatggcttcctacaggttgatgaa
gtgcatcctgaatactatcagggtgcttataagctcaagaaaggtcaccgttatcccctg
ctccagaaggttcttaagccgggacaggaaattttcgtacaggtagtgaaagaacctacc
ggtaagaagggtgcattcctttcctcatatctttctattccgggccgttactttgttctt
actcccggacgcgagcagatcggtatttcccgcaagattgaagacgaaaaagagcgcgaa
agactcaaggaacttatcgatgaggtcaatcccggagcgggggtgggagttattgttcgt
accgccagcaagggacagagcaaatcagccctgcgccgcgactttaaattcctgactcgt
ctttggaatgacatccgcgaaaaaggacaggacgccaagccgccgtccctcgtttatgag
gaaatgggactggcagcccgtgccgtgcgcgattacttgtcttccgatgttgttgaaatc
tgggttgatgatcaggaaacccttgagcaggtaaagaaactggcaactctttctttcccg
cgccgttccaatctggttaaactccattccgatactgacaaatctctctgggaacggttt
aaccttgttaagcagatcgagcagatttacggtcgtgaggttaacctgccctccggtgga
cgacttgtcttcgaccagaccgaggccctgaccgcaatcgatatcaactccggcaagatt
ggcggcgagcgcaatttcaaggaaatggctctcaaaaccaacaaggaaagtgccgaaatg
atcgcccgccagctcaagctgcgtgaccttggcggtcaggttgttatcgactttattgag
atgaaagaccccaagcattgccgcgaggtagaaaagaccatgcgggcagctcttaagggc
gaccgtgcgcgtaccgatgtcggccgtatttcccgttttgggcttatggaactggttcgc
cagcgtctgggatcatccgcaattgcggtttccaccgaggcttgtccctgctgtgacggt
accggtattcgtcgcaacatggaatggcaggctatgcaggccatcaaagatatttatcgt
atgcttcgcagacctaactgcgaatccccgttggtctacgatgccgaggaagagttggct
ctttacctactcaaccacaagcgcgatgcaatctctcagtatgagaagatgttcggtacc
aagattaacatcgaaatccagtggaatgaataa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (4)   
   Pfam (4)   
All databases (15)   

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