KEGG   Desulfocapsa sulfexigens: UWK_03137
Entry
UWK_03137         CDS       T02473                                 
Name
(GenBank) DNA/RNA helicase, superfamily II
  KO
K05592  ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
Organism
dsf  Desulfocapsa sulfexigens
Pathway
dsf03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:dsf00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    UWK_03137
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:dsf03019]
    UWK_03137
   03009 Ribosome biogenesis [BR:dsf03009]
    UWK_03137
Enzymes [BR:dsf01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     UWK_03137
Messenger RNA biogenesis [BR:dsf03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     UWK_03137
Ribosome biogenesis [BR:dsf03009]
 Prokaryotic type
  rRNA helicases
   UWK_03137
SSDB
Motif
Pfam: DEAD Helicase_C DbpA ResIII CMS1 DUF4795
Other DBs
NCBI-ProteinID: AGF79666
UniProt: M1PTJ3
Position
3479034..3480749
AA seq 571 aa
MKTFKELGIDENILKGLEALGFETPTAVQEQVIPLMIEKQVDLVSLAQTGTGKTAAFGIP
LIQWTNPSKRHTQSLVLCPTRELCIQVAKDLESFSKFVPKINILAVYGGARIDQQINSLQ
KGVQIIIATPGRLKDLLNRKAVNLSKINYVVFDEADEMLQMGFQDELTAILAHTPKEKNT
LLFSATMPQEVARISQKYMSNPIELTIGTKNAGAENVRHEFYLVHPKNRYLALKRIVDNS
PDIYSIVFCRTRKETNDIAHKLIQDGYNADALHGDLSQAQRDQVMGRFRCRNIQILVATD
VAARGLDVNDLTHVVNYNLPDETSGYTHRSGRTGRAGRKGISIAIIASNEQYRLRLIENK
IQKKFIQCRIPTGEEICRKQLINQIDTVMDVKVNHDQIAPLYEEIAEKLAHLDREALIKQ
FVSLEFNRFLEYYKNATDLNISSTQKDGRGRTERAPGELQKDLLHPKNKFTTFSINVGRR
QGIMPQGVIGKINAIQDVGRIKIGKIEILRNSATIEADSRYTAQILAAFQRSEINGKTIS
IEITKSKGPSKAYAGKRKGNFHRRERKPQAA
NT seq 1716 nt   +upstreamnt  +downstreamnt
atgaaaacttttaaagaattaggcattgatgaaaacatcctgaagggtcttgaagctcta
ggatttgaaactcccacagctgtccaggaacaggtaatcccactgatgattgaaaaacag
gtcgatcttgtcagcctggctcagactggaacaggaaagacagcagcttttggaattccc
ctgatccagtggaccaatccttcaaaacggcacactcagagtcttgtcctgtgtcccacc
cgggaactctgcattcaagtcgccaaagaccttgaatcattctcaaaattcgtacccaaa
ataaacattcttgccgtctatggcggtgcccgtattgaccagcagataaacagccttcaa
aagggtgttcaaattattatcgcaacaccgggccgccttaaggatctccttaaccgcaag
gccgttaatctttctaagattaattatgtggtttttgatgaagctgatgaaatgctgcag
atggggttccaggatgagcttacagctatcctcgctcacactccgaaggaaaaaaacacc
cttcttttctctgcaaccatgccacaagaagtcgccaggatttcacagaaatatatgtca
aatcccattgaactcacgattggtaccaagaatgccggtgctgaaaatgttcgtcacgaa
ttttatctggttcaccccaaaaatcgctacctggctttaaaacggattgtcgataattca
cccgacatttattctattgttttctgtagaacccgtaaagaaaccaatgatattgctcat
aaattaatccaggatggttacaatgcggatgcgttacatggggatctctctcaggcccag
cgtgatcaggtcatgggtagatttcgctgtagaaacattcagatccttgtagcaacggat
gttgcggcaaggggtcttgatgtgaacgacctcacccatgtggtcaactataacctgccc
gatgaaacatcgggatacacccatcgcagtggccgaacaggaagagccgggcgcaaaggg
atatccatcgccatcatcgcttcaaatgaacagtaccgccttcgattgatcgaaaataaa
atacagaaaaaatttattcagtgcagaatcccgactggagaggaaatctgcagaaaacaa
ttaatcaaccagatcgataccgtcatggatgtaaaggtaaaccatgaccagattgcgcct
ttgtatgaagaaattgctgagaaactagcccacctcgatcgtgaagccctgattaaacaa
tttgtttcactcgaattcaaccgctttctcgaatactacaaaaatgcaaccgatttgaat
attagttcaacccaaaaagacggtcgaggcagaacggaaagagctcctggagaattacag
aaggacctactgcaccccaaaaacaaattcaccactttcagtataaatgttgggaggcgc
cagggtataatgccacagggggtgattgggaaaataaatgcaattcaggatgttggtagg
ataaagattggaaagatagaaatattgagaaactcagcgaccattgaagcggacagtcgt
tacaccgctcagatactcgcagcctttcagcgttctgaaataaacggaaagacgatctct
atagaaatcacaaaatccaaaggtccttcaaaagcctatgcaggaaaacgtaagggcaat
tttcaccgtagagagcgaaagccacaagccgcctaa

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (13)   
   KEGG ORTHOLOGY (1)   
   RefGene (10)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (26)   

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