KEGG   Dinoroseobacter shibae: Dshi_1815
Entry
Dshi_1815         CDS       T00612                                 
Name
(GenBank) putative transcriptional regulator
  KO
K19731  LuxR family transcriptional regulator, quorum-sensing system regulator CciR
Organism
dsh  Dinoroseobacter shibae
Pathway
dsh02024  Quorum sensing
Brite
KEGG Orthology (KO) [BR:dsh00001]
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    Dshi_1815
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:dsh03000]
    Dshi_1815
Transcription factors [BR:dsh03000]
 Prokaryotic type
  Helix-turn-helix
   LuxR family
    Dshi_1815
SSDB
Motif
Pfam: Autoind_bind GerE HTH_10 HTH_23 HTH_Tnp_ISL3 HTH_28 Sigma70_r4_2 HTH_38
Other DBs
NCBI-ProteinID: ABV93557
RoseoBase: Dshi_1815
UniProt: A8LML2
Position
complement(1893248..1894045)
AA seq 265 aa
MTKDELLAAATSATQVSELWTLMLDYAETQRIARVSYHHHGFDEKWGAAAANPTTLRRAM
DDVIVSATPRFHIIAHGFPREWVDIYVDDHLYEIDPIPALAQRRAVPFLWSEVAELTRLA
EEQAAFLERSMPARVGDGVAIQVFGPNMRHGYVGMGFGDRPRDVTAPQLAEYQLVSQLMH
LRACRLIEERNRSEIALSARETEVLGWMARGKSKTVIADILGLSPHTVDTLVRRIFRKLE
VFDRTAAILKAINLGLVPAMSTVGD
NT seq 798 nt   +upstreamnt  +downstreamnt
atgacgaaggacgaactcctggcggcagccaccagcgcgacacaggtctccgagctgtgg
acgctgatgctggactatgccgagacccagcggatcgcccgtgtcagctaccaccaccac
ggcttcgacgagaaatggggcgcggcggcggccaacccgaccaccctgcgccgcgcgatg
gacgacgtgatcgtctcggccacgccgcggtttcacatcatcgcccacgggtttcccagg
gaatgggtggatatctatgtcgatgaccacctctacgagatcgacccgatcccggccctc
gcccagcgccgcgccgtccccttcctgtggagcgaggttgccgagctgacccggctggcc
gaggaacaggcggccttcctcgaacgctccatgccggcgcgggtcggcgacggggtggcg
atccaggtcttcgggcccaacatgcgccacggctatgtcgggatgggcttcggcgaccgg
ccgcgcgacgtgaccgcgccgcaactggccgagtaccagctggtctcgcaactgatgcac
ctgcgcgcctgccgcctgatcgaagagcgcaaccgcagcgagatcgccctgagcgcgcgg
gagaccgaagtgctcggctggatggcccgcggcaagagcaagaccgtgatcgccgacatc
ctcggcctctcgccccataccgtcgacacactggtgcggcggatcttccgcaagctggag
gtcttcgaccgcaccgccgccatcctcaaggcgatcaacctcggcctggtgccggccatg
tccaccgtgggcgactga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   RefGene (2)   
   NCBI-PROTEINID (1)   
   OC (1)   
   ROSEOBASE (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (8)   
   Pfam (8)   
All databases (19)   

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