KEGG   Dinoroseobacter shibae: Dshi_3463
Entry
Dshi_3463         CDS       T00612                                 
Symbol
rph
Name
(GenBank) ribonuclease PH
  KO
K00989  ribonuclease PH [EC:2.7.7.56]
Organism
dsh  Dinoroseobacter shibae
Brite
KEGG Orthology (KO) [BR:dsh00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:dsh03016]
    Dshi_3463 (rph)
Enzymes [BR:dsh01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.56  tRNA nucleotidyltransferase
     Dshi_3463 (rph)
Transfer RNA biogenesis [BR:dsh03016]
 Prokaryotic type
  3'processing and CCA adding factors
   3'processing factors
    Dshi_3463 (rph)
SSDB
Motif
Pfam: RNase_PH RNase_PH_C
Other DBs
NCBI-ProteinID: ABV95196
RoseoBase: Dshi_3463
UniProt: A8LPD1
Position
complement(3643582..3644295)
AA seq 237 aa
MRPSGRQTHEMRGVSIETGFTRHAEGSCLISMGETRVLCTASVEERVPPFLRNTGLGWVT
AEYGMLPRATHTRGRREAAAGKQSGRTQEIQRLIGRSLRAGVDRVALGERQITIDCDVIQ
ADGGTRCASITGAWVALRLAVNKLMKAGDIITDPLTDHVAAVSCGLYAGQPVLDLDYAED
SEAGTDANFVMTGSGGLIEVQGSAEGAPFSRNALNTLMDLAEVGVAELVAAQKAATS
NT seq 714 nt   +upstreamnt  +downstreamnt
atgcgaccgtcaggacgtcaaacccatgagatgcgcggcgtctcgatcgaaactggcttc
accaggcacgccgaaggatcctgcctgatctcaatgggtgaaacacgcgtgttgtgcacc
gcctccgttgaggagcgcgtgccgccgtttctgcgtaacaccggtcttggctgggtgacg
gcggaatatggaatgttgccccgcgcaacccatacccgcgggcgccgggaagctgccgct
gggaagcaatcggggcgcacccaggagatccagcgcctaatcggacggagcctccgcgcg
ggggtcgaccgcgtggcgctgggagagcggcagatcaccatcgattgcgatgtgatccag
gccgatggcggcacacgctgcgcgtcgatcaccggggcctgggtcgcgctgaggcttgcc
gtcaacaagctgatgaaggcgggcgatatcattacggacccgctgacagatcacgtagcc
gcggtgtcctgtggtctctacgccgggcaacccgtactggatctggattatgcggaggat
tccgaggccgggaccgacgcgaatttcgtgatgaccggctccggcggtctgatcgaggtg
caaggttcggccgagggtgcgccgttctcgcgcaatgccctcaacacgctgatggacctt
gccgaggtcggtgttgccgagctggtcgccgcacagaaggccgccaccagctga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (26)   
   KEGG ORTHOLOGY (1)   
   RefGene (22)   
   NCBI-PROTEINID (1)   
   OC (1)   
   ROSEOBASE (1)   
Protein sequence (2)   
   UniProt (1)   
   SWISS-PROT (1)   
Protein domain (2)   
   Pfam (2)   
All databases (35)   

Download RDF
DBGET integrated database retrieval system